RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 B2MP61769 119 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 ACTL10Q5JWF8 245 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 PXDC1Q5TGL8 231 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 LINC00305Q7Z4B0 112 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 S100A7AQ86SG5 101 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 C16orf92Q96LL3 132 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 SHANK2-AS3Q9BTD1 123 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 PXMP4Q9Y6I8 212 aa8.19□□□□□ -1.1
LIG1-211ENST00000596457 C3orf84H3BNL1 204 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 RPL29P47914 159 aaKnown RBP8.18□□□□□ -1.1
LIG1-211ENST00000596457 OPCMLQ14982 345 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 Q5BKY6 102 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 IGFL4Q6B9Z1 124 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 ZNF709Q8N972 641 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 OR1L4Q8NGR5 311 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 LRRC20Q8TCA0 184 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 SCGB1C1Q8TD33 95 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 GPR82Q96P67 336 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 ATP5SQ99766 215 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 NPCDR1Q9BY65 106 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 DNAJC4Q9NNZ3 241 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 SLC39A9Q9NUM3 307 aa8.18□□□□□ -1.1
LIG1-211ENST00000596457 ELOA3CA0A087WX78 387 aaPredicted RBP8.17□□□□□ -1.1
LIG1-211ENST00000596457 TRAV5A0A0B4J249 113 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 IFNA5P01569 189 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 GIPP09681 153 aaPredicted RBP8.17□□□□□ -1.1
LIG1-211ENST00000596457 LYL1P12980 280 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 RPL7P18124 248 aaKnown RBP8.17□□□□□ -1.1
LIG1-211ENST00000596457 DEFB1P60022 68 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 PRR20EP86478 221 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 PRR20CP86479 221 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 PRR20DP86480 221 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 PRR20BP86481 221 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 PRR20AP86496 221 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 DEFB135Q30KP9 77 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 TMEM37Q8WXS4 190 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 WDR61Q9GZS3 305 aaKnown RBP8.17□□□□□ -1.1
LIG1-211ENST00000596457 CSTL1Q9H114 145 aa8.17□□□□□ -1.1
LIG1-211ENST00000596457 FXYD6-FXYD2A0A087WZ82 144 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 C17orf112F2Z3M2 114 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 H3BTX0 84 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 SPRY2O43597 315 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 MPDU1O75352 247 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 CA1P00915 261 aaPredicted RBP8.16□□□□□ -1.1
LIG1-211ENST00000596457 IGKV3-20P01619 116 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 PRB4P10163 310 aaPredicted RBP8.16□□□□□ -1.1
LIG1-211ENST00000596457 PSMB3P49720 205 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 MEOX2P50222 304 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 MORN5Q5VZ52 161 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 PFDN5Q99471 154 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 WFDC1Q9HC57 220 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 COL7A1Q02388 2944 aa8.16□□□□□ -1.1
LIG1-211ENST00000596457 KIR2DL5BA0A0G2JN68 375 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 KIR2DL5BA0A0G2JPC4 375 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 UBE2CO00762 179 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 SOCS3O14543 225 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 GCSAMLQ5JQS6 135 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 BPIFA4PQ86YQ2 179 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 KIR2DL5AQ8N109 375 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 RNF182Q8N6D2 247 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 OR4B1Q8NGF8 309 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 OR2T35Q8NGX2 323 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 KIR2DL5BQ8NHK3 375 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 C20orf173Q96LM9 149 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 C17orf77Q96MU5 243 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 OVOL2Q9BRP0 275 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 SEPSECSQ9HD40 501 aaKnown RBP8.15□□□□□ -1.1
LIG1-211ENST00000596457 RNF24Q9Y225 148 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 RYR2Q92736 4967 aa8.15□□□□□ -1.1
LIG1-211ENST00000596457 AGRNO00468 2067 aa8.15□□□□□ -1.11
LIG1-211ENST00000596457 DNAH9Q9NYC9 4486 aa8.15□□□□□ -1.11
LIG1-211ENST00000596457 HYDINQ4G0P3 5121 aa8.15□□□□□ -1.11
LIG1-211ENST00000596457 F6UB75 175 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 SMLR1H3BR10 107 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 ISLRO14498 428 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 HLA-DMBP28068 263 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 FXYD7P58549 80 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 FFAR4Q5NUL3 377 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 GDF5OSQ5U4N7 250 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 FAM78BQ5VT40 261 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 EBLN2Q6P2I7 272 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 TRPT1Q86TN4 253 aaKnown RBP8.14□□□□□ -1.11
LIG1-211ENST00000596457 INO80EQ8NBZ0 244 aaPredicted RBP8.14□□□□□ -1.11
LIG1-211ENST00000596457 GATAD1Q8WUU5 269 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 CHAC2Q8WUX2 184 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 ASB13Q8WXK3 278 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 RPRMQ9NS64 109 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 RFNGQ9Y644 331 aa8.14□□□□□ -1.11
LIG1-211ENST00000596457 H3BMM0 161 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 ZNF705DP0CH99 300 aaPredicted RBP8.13□□□□□ -1.11
LIG1-211ENST00000596457 ZNF705BP0CI00 300 aaPredicted RBP8.13□□□□□ -1.11
LIG1-211ENST00000596457 SAMD13Q5VXD3 122 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 SPATA31B1PQ5VZV4 182 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 Q6ZWC4 215 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 ZNF738Q8NE65 137 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 RNF183Q96D59 192 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 KCNIP2Q9NS61 270 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 CLEC5AQ9NY25 188 aa8.13□□□□□ -1.11
LIG1-211ENST00000596457 A0A087X0K7 114 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms