RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 OR1L4Q8NGR5 311 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 THAP6Q8TBB0 222 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 ASB13Q8WXK3 278 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 LINC00052Q96N35 136 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 SCRT1Q9BWW7 348 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 DNAJC4Q9NNZ3 241 aa12.74□□□□□ -0.37
SHKBP1-212ENST00000596163 TMEM41BQ5BJD5 291 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 ACTL10Q5JWF8 245 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 C10orf113Q5VZT2 155 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 MORN3Q6PF18 240 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 PATE2Q6UY27 113 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 LINC00305Q7Z4B0 112 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 RNF183Q96D59 192 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 C16orf92Q96LL3 132 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 PFDN5Q99471 154 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 OVOL2Q9BRP0 275 aa12.73□□□□□ -0.37
SHKBP1-212ENST00000596163 KNCNA6PVL3 124 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 SPP1P10451 314 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 CXCL3P19876 107 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 RPL12P30050 165 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 NUTF2P61970 127 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 PRR20EP86478 221 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 PRR20CP86479 221 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 PRR20DP86480 221 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 PRR20BP86481 221 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 PRR20AP86496 221 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 FGL1Q08830 312 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 FCN2Q15485 313 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 SPATA31B1PQ5VZV4 182 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 MIC13Q5XKP0 118 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 TRPT1Q86TN4 253 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 ZNF709Q8N972 641 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 GATAD1Q8WUU5 269 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 UHRF2Q96PU4 802 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 SLC39A9Q9NUM3 307 aa12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 HUWE1Q7Z6Z7 4374 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-212ENST00000596163 C3orf84H3BNL1 204 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 SOCS3O14543 225 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 CA1P00915 261 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 B2MP61769 119 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 CLINT1Q14677 625 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 OPCMLQ14982 345 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 OXA1LQ15070 435 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 DEFB135Q30KP9 77 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 KCNIP2Q9NS61 270 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 MBD2Q9UBB5 411 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 HSPB11Q9Y547 144 aa12.71□□□□□ -0.37
SHKBP1-212ENST00000596163 C17orf112F2Z3M2 114 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 LYL1P12980 280 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 FOXI2Q6ZQN5 318 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 BPIFA4PQ86YQ2 179 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 OR11H7Q8NGC8 314 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 IL17DQ8TAD2 202 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 LRRC20Q8TCA0 184 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 TMEM37Q8WXS4 190 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 ATP5SQ99766 215 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 EDA2RQ9HAV5 297 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 RPRMQ9NS64 109 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 PXMP4Q9Y6I8 212 aa12.7□□□□□ -0.38
SHKBP1-212ENST00000596163 IFNA5P01569 189 aa12.69□□□□□ -0.38
SHKBP1-212ENST00000596163 EBLN2Q6P2I7 272 aa12.69□□□□□ -0.38
SHKBP1-212ENST00000596163 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.69□□□□□ -0.38
SHKBP1-212ENST00000596163 MUC7Q8TAX7 377 aa12.69□□□□□ -0.38
SHKBP1-212ENST00000596163 NPCDR1Q9BY65 106 aa12.69□□□□□ -0.38
SHKBP1-212ENST00000596163 A0A087X0K7 114 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 H3BMM0 161 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 GIPP09681 153 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 SCGB1C1Q8TD33 95 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 C1QTNF4Q9BXJ3 329 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 WDR61Q9GZS3 305 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 SAV1Q9H4B6 383 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
SHKBP1-212ENST00000596163 STAB2Q8WWQ8 2551 aa12.67□□□□□ -0.38
SHKBP1-212ENST00000596163 CXCL2P19875 107 aa12.67□□□□□ -0.38
SHKBP1-212ENST00000596163 NBEAL2Q6ZNJ1 2754 aa12.66□□□□□ -0.38
SHKBP1-212ENST00000596163 LCN15Q6UWW0 184 aa12.66□□□□□ -0.38
SHKBP1-212ENST00000596163 C17orf77Q96MU5 243 aa12.66□□□□□ -0.38
SHKBP1-212ENST00000596163 CLUHP3Q96NS8 147 aa12.66□□□□□ -0.38
SHKBP1-212ENST00000596163 RARRES2Q99969 163 aa12.66□□□□□ -0.38
SHKBP1-212ENST00000596163 MRPS12O15235 138 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-212ENST00000596163 GUK1Q16774 197 aa12.65□□□□□ -0.38
SHKBP1-212ENST00000596163 SLC50A1Q9BRV3 221 aa12.65□□□□□ -0.38
SHKBP1-212ENST00000596163 SMIM3Q9BZL3 60 aa12.65□□□□□ -0.38
SHKBP1-212ENST00000596163 CLEC5AQ9NY25 188 aa12.65□□□□□ -0.38
SHKBP1-212ENST00000596163 DUSP14O95147 198 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-212ENST00000596163 OR4B1Q8NGF8 309 aa12.64□□□□□ -0.39
SHKBP1-212ENST00000596163 OR11H2Q8NH07 326 aa12.64□□□□□ -0.39
SHKBP1-212ENST00000596163 PARD6GQ9BYG4 376 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-212ENST00000596163 HRH4Q9H3N8 390 aa12.64□□□□□ -0.39
SHKBP1-212ENST00000596163 TRAV8-2A0A0B4J237 113 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 A0A0J9YX75 114 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 PSG3Q16557 428 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 FAM78BQ5VT40 261 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 INO80EQ8NBZ0 244 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 ZNF738Q8NE65 137 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 C20orf173Q96LM9 149 aa12.63□□□□□ -0.39
SHKBP1-212ENST00000596163 TENM3Q9P273 2699 aa12.62□□□□□ -0.39
SHKBP1-212ENST00000596163 TRAV5A0A0B4J249 113 aa12.62□□□□□ -0.39
SHKBP1-212ENST00000596163 IGKV3-20P01619 116 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 1063.6 ms