RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PFDN2Q9UHV9 154 aa8.16□□□□□ -1.1
VRK3-210ENST00000596121 UBE2L5PA0A1B0GUS4 154 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 RLN2P04090 185 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 C4BPBP20851 252 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 Q5BKY6 102 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 IGFL4Q6B9Z1 124 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 STX12Q86Y82 276 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 OR5C1Q8NGR4 320 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 MUC7Q8TAX7 377 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 LINC00052Q96N35 136 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 ARV1Q9H2C2 271 aa8.15□□□□□ -1.1
VRK3-210ENST00000596121 F6UB75 175 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 H3BMM0 161 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 FGF7P21781 194 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 RAP2BP61225 183 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 SNRPD3P62318 126 aaKnown RBP8.14□□□□□ -1.11
VRK3-210ENST00000596121 HBG1P69891 147 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 HBG2P69892 147 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 OPCMLQ14982 345 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 ATP6V1FQ16864 119 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 GCSAMLQ5JQS6 135 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 STHQ8IWL8 128 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 THAP6Q8TBB0 222 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 CHAC2Q8WUX2 184 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 MBD2Q9UBB5 411 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 TP53TG1Q9Y2A0 90 aa8.14□□□□□ -1.11
VRK3-210ENST00000596121 DYNC2H1Q8NCM8 4307 aaKnown RBP8.14□□□□□ -1.11
VRK3-210ENST00000596121 RYR3Q15413 4870 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 TRAV5A0A0B4J249 113 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 ISLRO14498 428 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 CA1P00915 261 aaPredicted RBP8.13□□□□□ -1.11
VRK3-210ENST00000596121 SNRPCP09234 159 aaKnown RBP8.13□□□□□ -1.11
VRK3-210ENST00000596121 PRB4P10163 310 aaPredicted RBP8.13□□□□□ -1.11
VRK3-210ENST00000596121 LYL1P12980 280 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 HLA-DMBP28068 263 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 GALR1P47211 349 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 RPL29P47914 159 aaKnown RBP8.13□□□□□ -1.11
VRK3-210ENST00000596121 PSMB3P49720 205 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 BAXQ07812 192 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 CLINT1Q14677 625 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 OXA1LQ15070 435 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 PLECQ15149 4684 aaKnown RBP8.13□□□□□ -1.11
VRK3-210ENST00000596121 PXDC1Q5TGL8 231 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 LINC00305Q7Z4B0 112 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 RNF182Q8N6D2 247 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 CSNK1G2-AS1Q8NCQ2 148 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 SLC25A31Q9H0C2 315 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 MED28Q9H204 178 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 WFDC1Q9HC57 220 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 DNAJC4Q9NNZ3 241 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 SLC39A9Q9NUM3 307 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 SACSQ9NZJ4 4579 aa8.13□□□□□ -1.11
VRK3-210ENST00000596121 A0A0J9YWU9 116 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 C3orf84H3BNL1 204 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 COX7A2P2O60397 106 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 HLA-DRB4P13762 266 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 ID1P41134 155 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 RGS21Q2M5E4 152 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 CASC10Q5T4H9 136 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 C10orf113Q5VZT2 155 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 ZFAND6Q6FIF0 208 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 C16orf92Q96LL3 132 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 GPR82Q96P67 336 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 NPCDR1Q9BY65 106 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 SAV1Q9H4B6 383 aaPredicted RBP8.12□□□□□ -1.11
VRK3-210ENST00000596121 CLEC5AQ9NY25 188 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 HSPB11Q9Y547 144 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 RFNGQ9Y644 331 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 PXMP4Q9Y6I8 212 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 HLA-DRB4X5D2U9 266 aa8.12□□□□□ -1.11
VRK3-210ENST00000596121 A0A087X0K7 114 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 H3BQ15 152 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 H3BTX0 84 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 IGKV3-20P01619 116 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 RPL7P18124 248 aaKnown RBP8.11□□□□□ -1.11
VRK3-210ENST00000596121 RPL12P30050 165 aaKnown RBP8.11□□□□□ -1.11
VRK3-210ENST00000596121 B2MP61769 119 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 FGL1Q08830 312 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 RAB31Q13636 194 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 SPATA31B1PQ5VZV4 182 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 FOXI2Q6ZQN5 318 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 SMIM3Q9BZL3 60 aa8.11□□□□□ -1.11
VRK3-210ENST00000596121 WDR61Q9GZS3 305 aaKnown RBP8.11□□□□□ -1.11
VRK3-210ENST00000596121 ELOA3CA0A087WX78 387 aaPredicted RBP8.1□□□□□ -1.11
VRK3-210ENST00000596121 A0A0J9YX75 114 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 ZNF705DP0CH99 300 aaPredicted RBP8.1□□□□□ -1.11
VRK3-210ENST00000596121 ZNF705BP0CI00 300 aaPredicted RBP8.1□□□□□ -1.11
VRK3-210ENST00000596121 IGLC2P0DOY2 106 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 SPP1P10451 314 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 ATF4P18848 351 aaPredicted RBP8.1□□□□□ -1.11
VRK3-210ENST00000596121 MEOX2P50222 304 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 FXYD7P58549 80 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 FAM78BQ5VT40 261 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 MORN3Q6PF18 240 aaPredicted RBP8.1□□□□□ -1.11
VRK3-210ENST00000596121 Q6ZRG5 221 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 ZNF709Q8N972 641 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 OR11H2Q8NH07 326 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 GATAD1Q8WUU5 269 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 X6R8D5 127 aa8.1□□□□□ -1.11
VRK3-210ENST00000596121 TENM2Q9NT68 2774 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms