RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SCRT1Q9BWW7 348 aa8.78□□□□□ -1
LIG3-213ENST00000590630 ARV1Q9H2C2 271 aa8.78□□□□□ -1
LIG3-213ENST00000590630 SLC25A32Q9H2D1 315 aa8.78□□□□□ -1
LIG3-213ENST00000590630 ISLRO14498 428 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 SOCS3O14543 225 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 COX7A2P2O60397 106 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 RPL7P18124 248 aaKnown RBP8.77□□□□□ -1.01
LIG3-213ENST00000590630 FGF7P21781 194 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 ID1P41134 155 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 RPL29P47914 159 aaKnown RBP8.77□□□□□ -1.01
LIG3-213ENST00000590630 PSMB3P49720 205 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 PRR20EP86478 221 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 PRR20CP86479 221 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 PRR20DP86480 221 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 PRR20BP86481 221 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 PRR20AP86496 221 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 FCN2Q15485 313 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 OR11H7Q8NGC8 314 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 CSTL1Q9H114 145 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 RETNQ9HD89 108 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 MBD2Q9UBB5 411 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 TP53TG1Q9Y2A0 90 aa8.77□□□□□ -1.01
LIG3-213ENST00000590630 LYL1P12980 280 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 RPL12P30050 165 aaKnown RBP8.76□□□□□ -1.01
LIG3-213ENST00000590630 B2MP61769 119 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 CLINT1Q14677 625 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 OPCMLQ14982 345 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 C10orf113Q5VZT2 155 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 MIC13Q5XKP0 118 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 PATE2Q6UY27 113 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 LINC00305Q7Z4B0 112 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 THAP6Q8TBB0 222 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 PFDN5Q99471 154 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 RSG1Q9BU20 258 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 NPCDR1Q9BY65 106 aa8.76□□□□□ -1.01
LIG3-213ENST00000590630 DNAH7Q8WXX0 4024 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 GIPP09681 153 aaPredicted RBP8.75□□□□□ -1.01
LIG3-213ENST00000590630 SPP1P10451 314 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 ATF4P18848 351 aaPredicted RBP8.75□□□□□ -1.01
LIG3-213ENST00000590630 FGL1Q08830 312 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 DEFB135Q30KP9 77 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 ACTL10Q5JWF8 245 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 TRPT1Q86TN4 253 aaKnown RBP8.75□□□□□ -1.01
LIG3-213ENST00000590630 OR1L4Q8NGR5 311 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 TMEM37Q8WXS4 190 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 C16orf92Q96LL3 132 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 ATP5SQ99766 215 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 OVOL2Q9BRP0 275 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 DNAJC4Q9NNZ3 241 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 KCNIP2Q9NS61 270 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 SLC39A9Q9NUM3 307 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 HSPB11Q9Y547 144 aa8.75□□□□□ -1.01
LIG3-213ENST00000590630 A0A087X0K7 114 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 KNCNA6PVL3 124 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 SPRY2O43597 315 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 S100A1P23297 94 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 NDUFA5Q16718 116 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 TMEM41BQ5BJD5 291 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 MORN3Q6PF18 240 aaPredicted RBP8.74□□□□□ -1.01
LIG3-213ENST00000590630 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 GATAD1Q8WUU5 269 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 RNF183Q96D59 192 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 LINC00052Q96N35 136 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 WDR61Q9GZS3 305 aaKnown RBP8.74□□□□□ -1.01
LIG3-213ENST00000590630 EDA2RQ9HAV5 297 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 PXMP4Q9Y6I8 212 aa8.74□□□□□ -1.01
LIG3-213ENST00000590630 BOLA2-SMG1P6H3BVE0 249 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 CA1P00915 261 aaPredicted RBP8.73□□□□□ -1.01
LIG3-213ENST00000590630 HLA-DRB4P13762 266 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 SPATA31B1PQ5VZV4 182 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 FOXI2Q6ZQN5 318 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 BPIFA4PQ86YQ2 179 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 ZNF709Q8N972 641 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 C17orf77Q96MU5 243 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 SAV1Q9H4B6 383 aaPredicted RBP8.73□□□□□ -1.01
LIG3-213ENST00000590630 RPRMQ9NS64 109 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 HLA-DRB4X5D2U9 266 aa8.73□□□□□ -1.01
LIG3-213ENST00000590630 C17orf112F2Z3M2 114 aa8.72□□□□□ -1.01
LIG3-213ENST00000590630 H3BMM0 161 aa8.72□□□□□ -1.01
LIG3-213ENST00000590630 MRPS12O15235 138 aaKnown RBP8.72□□□□□ -1.01
LIG3-213ENST00000590630 IFNA5P01569 189 aa8.72□□□□□ -1.01
LIG3-213ENST00000590630 CXCL2P19875 107 aa8.72□□□□□ -1.01
LIG3-213ENST00000590630 NUTF2P61970 127 aaKnown RBP8.72□□□□□ -1.01
LIG3-213ENST00000590630 PARD6GQ9BYG4 376 aaPredicted RBP8.72□□□□□ -1.01
LIG3-213ENST00000590630 MORN5Q5VZ52 161 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 EBLN2Q6P2I7 272 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 LCN15Q6UWW0 184 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 MUC7Q8TAX7 377 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 LRRC20Q8TCA0 184 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 SCGB1C1Q8TD33 95 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 CLUHP3Q96NS8 147 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 AQP10Q96PS8 301 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 SMIM3Q9BZL3 60 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 HRH4Q9H3N8 390 aa8.71□□□□□ -1.02
LIG3-213ENST00000590630 CSMD3Q7Z407 3707 aa8.7□□□□□ -1.02
LIG3-213ENST00000590630 TENM2Q9NT68 2774 aa8.7□□□□□ -1.02
LIG3-213ENST00000590630 TRAV8-2A0A0B4J237 113 aa8.7□□□□□ -1.02
LIG3-213ENST00000590630 C3orf84H3BNL1 204 aa8.7□□□□□ -1.02
LIG3-213ENST00000590630 GIG44P09565 113 aaPredicted RBP8.7□□□□□ -1.02
LIG3-213ENST00000590630 IGLC2P0DOY2 106 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms