RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SPATA31B1PQ5VZV4 182 aa14.66□□□□□ -0.06
SHMT1-209ENST00000582653 GSKIPQ9P0R6 139 aa14.66□□□□□ -0.06
SHMT1-209ENST00000582653 HECTD4Q9Y4D8 3996 aa14.65□□□□□ -0.06
SHMT1-209ENST00000582653 PLA2G10O15496 165 aa14.65□□□□□ -0.06
SHMT1-209ENST00000582653 C1orf158Q8N1D5 194 aa14.65□□□□□ -0.06
SHMT1-209ENST00000582653 C7orf50Q9BRJ6 194 aaKnown RBP14.65□□□□□ -0.06
SHMT1-209ENST00000582653 SLC25A39Q9BZJ4 359 aaPredicted RBP14.65□□□□□ -0.06
SHMT1-209ENST00000582653 TMEM189A5PLL7 270 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 H3BRN7 92 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 AMBPP02760 352 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 SPART-AS1P0CW21 52 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 FGL1Q08830 312 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 SAMD13Q5VXD3 122 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 TMEM14EPQ6UXP3 125 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 ZBTB8BQ8NAP8 495 aaPredicted RBP14.64□□□□□ -0.07
SHMT1-209ENST00000582653 PLA2G2EQ9NZK7 142 aa14.64□□□□□ -0.07
SHMT1-209ENST00000582653 TRAV8-2A0A0B4J237 113 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 OR5G3P0C626 314 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 LINC00869P0C866 280 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 DLK1P80370 383 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 RNF182Q8N6D2 247 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 MITD1Q8WV92 249 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 GPR82Q96P67 336 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 UHRF2Q96PU4 802 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 SHANK2-AS3Q9BTD1 123 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 NDUFAF3Q9BU61 184 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 HIGD1AQ9Y241 93 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 RFNGQ9Y644 331 aa14.63□□□□□ -0.07
SHMT1-209ENST00000582653 HYPMO75409 117 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 P0DMU3 169 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 FAM231AP0DMU4 169 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 FAM231CP0DMU5 169 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 RAP2BP61225 183 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 AMTNQ6UX39 209 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 OR10P1Q8NGE3 313 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 C20orf85Q9H1P6 137 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 NPVFQ9HCQ7 196 aa14.62□□□□□ -0.07
SHMT1-209ENST00000582653 RCL1Q9Y2P8 373 aaKnown RBP14.62□□□□□ -0.07
SHMT1-209ENST00000582653 DNAH2Q9P225 4427 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 CCSO14618 274 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 MBPP02686 304 aaPredicted RBP14.61□□□□□ -0.07
SHMT1-209ENST00000582653 S100A7P31151 101 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 ARL16Q0P5N6 197 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 PATE2Q6UY27 113 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 POM121L12Q8N7R1 296 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 GOLT1BQ9Y3E0 138 aa14.61□□□□□ -0.07
SHMT1-209ENST00000582653 A8MTW9 85 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 LYRM1O43325 122 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 CNN1P51911 297 aaKnown RBP14.6□□□□□ -0.07
SHMT1-209ENST00000582653 TAS2R30P59541 319 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 PLP1P60201 277 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 SLC38A11Q08AI6 406 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 FAM222AQ5U5X8 452 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 LINC00336Q6ZUF6 198 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 ARL6Q9H0F7 186 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 DKK2Q9UBU2 259 aa14.6□□□□□ -0.07
SHMT1-209ENST00000582653 TRAV6A0A075B6T7 132 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 C7orf66A4D0T2 115 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 TSC22D2O75157 780 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 HBE1P02100 147 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 PRM2P04554 102 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 PRB4P10163 310 aaPredicted RBP14.59□□□□□ -0.07
SHMT1-209ENST00000582653 SELENOTP62341 195 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 CNPY1Q3B7I2 92 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 KRTAP17-1Q9BYP8 105 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 MGAT4CQ9UBM8 478 aa14.59□□□□□ -0.07
SHMT1-209ENST00000582653 LOC102723971A0A1B0GUV8 181 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 FNDC10F2Z333 226 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 M0R2Z0 102 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 TCRBP04435 133 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 RPL7P18124 248 aaKnown RBP14.58□□□□□ -0.08
SHMT1-209ENST00000582653 SPINK13Q1W4C9 94 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 TEPPQ6URK8 271 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 OR11H7Q8NGC8 314 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 FAM210BQ96KR6 192 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 IGF2BP2-AS1Q96M15 143 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 FAT2Q9NYQ8 4349 aa14.58□□□□□ -0.08
SHMT1-209ENST00000582653 TEX48A0A1B0GUV7 120 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 FAM25EA8MYX2 175 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 DUSP14O95147 198 aaKnown RBP14.57□□□□□ -0.08
SHMT1-209ENST00000582653 ZNF738Q8NE65 137 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 SEC22CQ9BRL7 303 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 NIPSNAP3BQ9BS92 247 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 TMEM208Q9BTX3 173 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 ARV1Q9H2C2 271 aa14.57□□□□□ -0.08
SHMT1-209ENST00000582653 YTHDF2Q9Y5A9 579 aaKnown RBP14.57□□□□□ -0.08
SHMT1-209ENST00000582653 DNAH17Q9UFH2 4485 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 HERC2O95714 4834 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 K7EPK0 472 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 AGPAT2O15120 278 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 CRXO43186 299 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-209ENST00000582653 SNRPCP09234 159 aaKnown RBP14.56□□□□□ -0.08
SHMT1-209ENST00000582653 OXA1LQ15070 435 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 RRN3P1Q2M238 152 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 NDUFA13Q9P0J0 144 aa14.56□□□□□ -0.08
SHMT1-209ENST00000582653 LSM5Q9Y4Y9 91 aaKnown RBP14.56□□□□□ -0.08
SHMT1-209ENST00000582653 A0A087X0K7 114 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 L7N2F9 121 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 GOSR2O14653 212 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 HTN3P15516 51 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms