RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 RAP2BP61225 183 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 POLR2GP62487 172 aaKnown RBP eCLIP9.79□□□□□ -0.84
CCDC40-216ENST00000576241 ID3Q02535 119 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 FAM222AQ5U5X8 452 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 TMEM144Q7Z5S9 345 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 POM121L12Q8N7R1 296 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 C20orf173Q96LM9 149 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 NIPSNAP3BQ9BS92 247 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 TMEM208Q9BTX3 173 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 PSENENQ9NZ42 101 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 DKK2Q9UBU2 259 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 DNAH11Q96DT5 4516 aa9.79□□□□□ -0.84
CCDC40-216ENST00000576241 LOC102723971A0A1B0GUV8 181 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 ZNF701M0R085 212 aaPredicted RBP9.78□□□□□ -0.84
CCDC40-216ENST00000576241 SSSCA1O60232 199 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 IL5P05113 134 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 RRN3P1Q2M238 152 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 TMEM182Q6ZP80 229 aaPredicted RBP9.78□□□□□ -0.84
CCDC40-216ENST00000576241 CYP2G1PQ6ZSU1 146 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 S100A7AQ86SG5 101 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 FAM210BQ96KR6 192 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 SCRT1Q9BWW7 348 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 RBM38Q9H0Z9 239 aaKnown RBP9.78□□□□□ -0.84
CCDC40-216ENST00000576241 DNAH2Q9P225 4427 aa9.78□□□□□ -0.84
CCDC40-216ENST00000576241 CENPXA8MT69 81 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 HYPMO75409 117 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 DUSP14O95147 198 aaKnown RBP9.77□□□□□ -0.85
CCDC40-216ENST00000576241 OR4E1P0C645 316 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 SELENOTP62341 195 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 FGL1Q08830 312 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 C4orf46Q504U0 113 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 LINC00336Q6ZUF6 198 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 C1orf158Q8N1D5 194 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 IGF2BP2-AS1Q96M15 143 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 SHANK2-AS3Q9BTD1 123 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 FLVCR2Q9UPI3 526 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 HIGD1AQ9Y241 93 aa9.77□□□□□ -0.85
CCDC40-216ENST00000576241 YTHDF2Q9Y5A9 579 aaKnown RBP9.77□□□□□ -0.85
CCDC40-216ENST00000576241 LINC00854A0A1B0GVQ3 168 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 A8MTW9 85 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 H3BRN7 92 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 SCGB1D2O95969 90 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 INSP01308 110 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 OR5G3P0C626 314 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 LINC00869P0C866 280 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 HTN3P15516 51 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 RPL7P18124 248 aaKnown RBP9.76□□□□□ -0.85
CCDC40-216ENST00000576241 CNN1P51911 297 aaKnown RBP9.76□□□□□ -0.85
CCDC40-216ENST00000576241 BAK1Q16611 211 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 UBE2DNLQ8IWF7 75 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 ZNF738Q8NE65 137 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 SMIM8Q96KF7 97 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 SLC25A39Q9BZJ4 359 aaPredicted RBP9.76□□□□□ -0.85
CCDC40-216ENST00000576241 MGAT4CQ9UBM8 478 aa9.76□□□□□ -0.85
CCDC40-216ENST00000576241 ANXA7P20073 488 aaKnown RBP9.75□□□□□ -0.85
CCDC40-216ENST00000576241 DAD1P61803 113 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 RRAS2P62070 204 aaPredicted RBP9.75□□□□□ -0.85
CCDC40-216ENST00000576241 DLK1P80370 383 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 OXA1LQ15070 435 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 IAH1Q2TAA2 248 aaPredicted RBP9.75□□□□□ -0.85
CCDC40-216ENST00000576241 IGFL4Q6B9Z1 124 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 AMTNQ6UX39 209 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 RNF182Q8N6D2 247 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 OR10P1Q8NGE3 313 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 C17orf77Q96MU5 243 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 RNF24Q9Y225 148 aa9.75□□□□□ -0.85
CCDC40-216ENST00000576241 TRAV8-2A0A0B4J237 113 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 FNDC10F2Z333 226 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 M0R2Z0 102 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 METTL15P1P0C7V9 234 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 PLP1P60201 277 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 B2MP61769 119 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 SPINK13Q1W4C9 94 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 OR11H7Q8NGC8 314 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 LRRC20Q8TCA0 184 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 UHRF2Q96PU4 802 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 NPVFQ9HCQ7 196 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 GSKIPQ9P0R6 139 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 HSPG2P98160 4391 aa9.74□□□□□ -0.85
CCDC40-216ENST00000576241 PMS2P5A8MQ11 134 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 M0R2N4 97 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 TSC22D2O75157 780 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 CCNKO75909 580 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 TAS2R30P59541 319 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 CNPY1Q3B7I2 92 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 TEPPQ6URK8 271 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 TMEM14EPQ6UXP3 125 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 ARL6Q9H0F7 186 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 PPP1R14DQ9NXH3 145 aa9.73□□□□□ -0.85
CCDC40-216ENST00000576241 DNAH17Q9UFH2 4485 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 A0A087X0K7 114 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 ZNF705GA8MUZ8 300 aaPredicted RBP9.72□□□□□ -0.85
CCDC40-216ENST00000576241 BOLA2-SMG1P6H3BVE0 249 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 K7EPK0 472 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 GOSR2O14653 212 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 IL7P13232 177 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 BTCP35070 178 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 RHOBP62745 196 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 HIST1H1AQ02539 215 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms