RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 RPL7P18124 248 aaKnown RBP13.62□□□□□ -0.23
CCDC40-213ENST00000574933 M6PRP20645 277 aa13.62□□□□□ -0.23
CCDC40-213ENST00000574933 EIF5AP63241 154 aaKnown RBP13.62□□□□□ -0.23
CCDC40-213ENST00000574933 MORN5Q5VZ52 161 aa13.62□□□□□ -0.23
CCDC40-213ENST00000574933 STOML3Q8TAV4 291 aa13.62□□□□□ -0.23
CCDC40-213ENST00000574933 MRPL32Q9BYC8 188 aaKnown RBP13.62□□□□□ -0.23
CCDC40-213ENST00000574933 PFDN1O60925 122 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 SPP1P10451 314 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 GALR1P47211 349 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 PAFAH1B2P68402 229 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 GUCA2BQ16661 112 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 ACOT6Q3I5F7 207 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-213ENST00000574933 LEMD1Q68G75 181 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 ZNF471Q9BX82 626 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-213ENST00000574933 SH3BGRL3Q9H299 93 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 MS4A6AQ9H2W1 248 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 SLC25A22Q9H936 323 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 SEPSECSQ9HD40 501 aaKnown RBP13.61□□□□□ -0.23
CCDC40-213ENST00000574933 NRN1Q9NPD7 142 aa13.61□□□□□ -0.23
CCDC40-213ENST00000574933 OR4C46A6NHA9 309 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 K7EQG2 157 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 MBP02144 154 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 FAM78BQ5VT40 261 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 DCANP1Q8TF63 244 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 C17orf77Q96MU5 243 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 FAM110AQ9BQ89 295 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 FUT9Q9Y231 359 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 SMAD5-AS1Q9Y6J3 95 aa13.6□□□□□ -0.23
CCDC40-213ENST00000574933 AGRNO00468 2067 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 A0A087X0K7 114 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 SEC11BP0C7V7 166 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 RHOBP62745 196 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 BPIFA4PQ86YQ2 179 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 BAP18Q8IXM2 172 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 Q8N1Y9 231 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 FAM167A-AS1Q96KT0 104 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 PRR25Q96S07 402 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 AURKAIP1Q9NWT8 199 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-213ENST00000574933 TMEM14CQ9P0S9 112 aa13.59□□□□□ -0.23
CCDC40-213ENST00000574933 TRAV5A0A0B4J249 113 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 C4BPBP20851 252 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 MEOX2P50222 304 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 RAB2AP61019 212 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 RPL11P62913 178 aaKnown RBP13.58□□□□□ -0.24
CCDC40-213ENST00000574933 SPATA31B1PQ5VZV4 182 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 SLC51BQ86UW2 128 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 STXBP6Q8NFX7 210 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 C19orf73Q9NVV2 129 aa13.58□□□□□ -0.24
CCDC40-213ENST00000574933 IGKV3-7A0A075B6H7 116 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 DNASE2O00115 360 aaPredicted RBP13.57□□□□□ -0.24
CCDC40-213ENST00000574933 SOCS3O14543 225 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 TPT1P13693 172 aaKnown RBP13.57□□□□□ -0.24
CCDC40-213ENST00000574933 CMC4P56277 68 aaPredicted RBP13.57□□□□□ -0.24
CCDC40-213ENST00000574933 TMEM41BQ5BJD5 291 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 SAMD13Q5VXD3 122 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 MIR17HGQ75NE6 70 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 GTSCR1Q86UQ5 136 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 GBGT1Q8N5D6 347 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 RPP25LQ8N5L8 163 aaKnown RBP13.57□□□□□ -0.24
CCDC40-213ENST00000574933 OR10G4Q8NGN3 311 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 OR10G9Q8NGN4 311 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 OR10G7Q8NGN6 311 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 SLC25A2Q9BXI2 301 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 RPRMQ9NS64 109 aa13.57□□□□□ -0.24
CCDC40-213ENST00000574933 CD7P09564 240 aa13.56□□□□□ -0.24
CCDC40-213ENST00000574933 IGLC2P0DOY2 106 aa13.56□□□□□ -0.24
CCDC40-213ENST00000574933 NKX2-5P52952 324 aaPredicted RBP13.56□□□□□ -0.24
CCDC40-213ENST00000574933 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.56□□□□□ -0.24
CCDC40-213ENST00000574933 ATF4P18848 351 aaPredicted RBP13.55□□□□□ -0.24
CCDC40-213ENST00000574933 TAS2R45P59539 299 aa13.55□□□□□ -0.24
CCDC40-213ENST00000574933 CD81P60033 236 aa13.55□□□□□ -0.24
CCDC40-213ENST00000574933 ODF3L2Q3SX64 289 aa13.55□□□□□ -0.24
CCDC40-213ENST00000574933 HRH4Q9H3N8 390 aa13.55□□□□□ -0.24
CCDC40-213ENST00000574933 FBN3Q75N90 2809 aa13.55□□□□□ -0.24
CCDC40-213ENST00000574933 A0A1W2PPV4 95 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 K7EIL1 84 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 ISLRO14498 428 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 HIST1H1EP10412 219 aaKnown RBP13.54□□□□□ -0.24
CCDC40-213ENST00000574933 TFPI2P48307 235 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 CDC34P49427 236 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-213ENST00000574933 AKR1C8PQ5T2L2 129 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 FAM122CQ6P4D5 195 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 WFDC3Q8IUB2 231 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 PLA2G2EQ9NZK7 142 aa13.54□□□□□ -0.24
CCDC40-213ENST00000574933 A8MZ25 164 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 UMAD1C9J7I0 102 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 ZNF253O75346 499 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 PRB2P02812 416 aaPredicted RBP13.53□□□□□ -0.24
CCDC40-213ENST00000574933 PSMB3P49720 205 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 GUK1Q16774 197 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 KHDC3LQ587J8 217 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 LCN15Q6UWW0 184 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 PQLC2Q6ZP29 291 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 FAM24BQ8N5W8 94 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 ZNF503Q96F45 646 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 OR51M1Q9H341 326 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 MAP6D1Q9H9H5 199 aa13.53□□□□□ -0.24
CCDC40-213ENST00000574933 OR11H12B2RN74 326 aa13.52□□□□□ -0.25
CCDC40-213ENST00000574933 H3BQ15 152 aa13.52□□□□□ -0.25
CCDC40-213ENST00000574933 STAG3L2P0CL84 134 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms