RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RPP25LQ8N5L8 163 aaKnown RBP6.93□□□□□ -1.3
VPS35-211ENST00000569950 STOML3Q8TAV4 291 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 PRR25Q96S07 402 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 DNAJC4Q9NNZ3 241 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 STAB2Q8WWQ8 2551 aa6.93□□□□□ -1.3
VPS35-211ENST00000569950 ELOA3CA0A087WX78 387 aaPredicted RBP6.92□□□□□ -1.3
VPS35-211ENST00000569950 H3BQ15 152 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 K7EQG2 157 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 JTBO76095 146 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 CD7P09564 240 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 IGLC2P0DOY2 106 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 RAB31Q13636 194 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 FFAR4Q5NUL3 377 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 C10orf113Q5VZT2 155 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 LCN12Q6JVE5 192 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 SIGLEC15Q6ZMC9 328 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 DYNLRB2Q8TF09 96 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 GATAD1Q8WUU5 269 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 CITED4Q96RK1 184 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 SLC25A2Q9BXI2 301 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 WFDC10AQ9H1F0 79 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 MS4A6AQ9H2W1 248 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 RPRMQ9NS64 109 aa6.92□□□□□ -1.3
VPS35-211ENST00000569950 AURKAIP1Q9NWT8 199 aaPredicted RBP6.92□□□□□ -1.3
VPS35-211ENST00000569950 A0A087X0K7 114 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 TRAV8-2A0A0B4J237 113 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 A0A1W2PS18 150 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 COX7A2P2O60397 106 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 GBGT1Q8N5D6 347 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 SCGB1C1Q8TD33 95 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 PFDN5Q99471 154 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 SPAG8Q99932 426 aaPredicted RBP6.91□□□□□ -1.3
VPS35-211ENST00000569950 GPR61Q9BZJ8 451 aa6.91□□□□□ -1.3
VPS35-211ENST00000569950 HUWE1Q7Z6Z7 4374 aaKnown RBP6.91□□□□□ -1.3
VPS35-211ENST00000569950 IGKV3-7A0A075B6H7 116 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 BORCS7-ASMTA0A0B4J1R7 106 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 TRAV2A0A0B4J234 112 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 C17orf112F2Z3M2 114 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 SLC17A3O00476 420 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 NDUFB4O95168 129 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 M6PRP20645 277 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 SERF2P84101 59 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 ZNF124Q15973 351 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 FAM78BQ5VT40 261 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 Q6ZRG5 221 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 ZNF709Q8N972 641 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 OR1L4Q8NGR5 311 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 FXYD5Q96DB9 178 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 GNPNAT1Q96EK6 184 aaPredicted RBP6.9□□□□□ -1.3
VPS35-211ENST00000569950 SAT2Q96F10 170 aaPredicted RBP6.9□□□□□ -1.3
VPS35-211ENST00000569950 C20orf173Q96LM9 149 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 ZNF471Q9BX82 626 aaPredicted RBP6.9□□□□□ -1.3
VPS35-211ENST00000569950 SLC25A22Q9H936 323 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 NRN1Q9NPD7 142 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 KCNIP2Q9NS61 270 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 ZNF586Q9NXT0 402 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 TMEM14CQ9P0S9 112 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 FUT9Q9Y231 359 aa6.9□□□□□ -1.3
VPS35-211ENST00000569950 KANTRA0A1W2PQU2 76 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 HELTA6NFD8 242 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 H3BTX0 84 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 LCE2BO14633 110 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 SNRPCP09234 159 aaKnown RBP6.89□□□□□ -1.31
VPS35-211ENST00000569950 SEC11BP0C7V7 166 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 PYYP10082 97 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 FHITP49789 147 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 DEFB1P60022 68 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 LINC00322Q6ZN03 302 aaPredicted RBP6.89□□□□□ -1.31
VPS35-211ENST00000569950 BAP18Q8IXM2 172 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 OR8I2Q8N0Y5 310 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 GRAMD2BQ96HH9 432 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 MRPL32Q9BYC8 188 aaKnown RBP6.89□□□□□ -1.31
VPS35-211ENST00000569950 TMEM231Q9H6L2 316 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 MAP6D1Q9H9H5 199 aa6.89□□□□□ -1.31
VPS35-211ENST00000569950 CD5P06127 495 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 STAG3L2P0CL84 134 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 STAG3L3P0CL85 134 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 RPL7P18124 248 aaKnown RBP6.88□□□□□ -1.31
VPS35-211ENST00000569950 HLA-DMBP28068 263 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 TFPI2P48307 235 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 GUCA2BQ16661 112 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 TMEM41BQ5BJD5 291 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 IGFL4Q6B9Z1 124 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 FAM122CQ6P4D5 195 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 RBPMS2Q6ZRY4 209 aaKnown RBP6.88□□□□□ -1.31
VPS35-211ENST00000569950 STXBP6Q8NFX7 210 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 OR10G4Q8NGN3 311 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 OR10G9Q8NGN4 311 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 OR10G7Q8NGN6 311 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 SUN5Q8TC36 379 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 TMED6Q8WW62 240 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 RAB24Q969Q5 203 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 GPR82Q96P67 336 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 FAM110AQ9BQ89 295 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 HRH4Q9H3N8 390 aa6.88□□□□□ -1.31
VPS35-211ENST00000569950 TRBV19A0A075B6N1 114 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 OR4C46A6NHA9 309 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 A8MZ25 164 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 HMGB3O15347 200 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms