RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 IGKV3-20P01619 116 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 BMI1P35226 326 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 PAFAH1B2P68402 229 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 FGL1Q08830 312 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 OXA1LQ15070 435 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 DEFB135Q30KP9 77 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 GDF5OSQ5U4N7 250 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 TEPPQ6URK8 271 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 OR8I2Q8N0Y5 310 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 OR5C1Q8NGR4 320 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 LINC00052Q96N35 136 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 RSG1Q9BU20 258 aa10.19□□□□□ -0.78
CLN3-235ENST00000568497 SLC25A39Q9BZJ4 359 aaPredicted RBP10.19□□□□□ -0.78
CLN3-235ENST00000568497 E5RGE8 158 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 F6UB75 175 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 H3BRN7 92 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 HYPMO75409 117 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 FABP1P07148 127 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 MED14OSP0DP75 135 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 CAMLGP49069 296 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 FXYD7P58549 80 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 ACTL10Q5JWF8 245 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 STX12Q86Y82 276 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 CHAC2Q8WUX2 184 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 HIGD1AQ9Y241 93 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 WDR83OSQ9Y284 106 aa10.18□□□□□ -0.78
CLN3-235ENST00000568497 HELTA6NFD8 242 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 RLN2P04090 185 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 SPATA31B1PQ5VZV4 182 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 RNF182Q8N6D2 247 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 TMEM37Q8WXS4 190 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 ARV1Q9H2C2 271 aa10.17□□□□□ -0.78
CLN3-235ENST00000568497 KLK5Q9Y337 293 aaPredicted RBP10.17□□□□□ -0.78
CLN3-235ENST00000568497 SOCS3O14543 225 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 ZNF705DP0CH99 300 aaPredicted RBP10.16□□□□□ -0.78
CLN3-235ENST00000568497 ZNF705BP0CI00 300 aaPredicted RBP10.16□□□□□ -0.78
CLN3-235ENST00000568497 VWC2Q2TAL6 325 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 OVOL2Q9BRP0 275 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 SHANK2-AS3Q9BTD1 123 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 NRN1Q9NPD7 142 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 CLEC5AQ9NY25 188 aa10.16□□□□□ -0.78
CLN3-235ENST00000568497 COX7A2P2O60397 106 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 C4BPBP20851 252 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 RPL12P30050 165 aaKnown RBP10.15□□□□□ -0.78
CLN3-235ENST00000568497 S100A11P31949 105 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 RAP2BP61225 183 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 CYCSP99999 105 aaKnown RBP10.15□□□□□ -0.78
CLN3-235ENST00000568497 OPCMLQ14982 345 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 CEMP1Q6PRD7 247 aaPredicted RBP10.15□□□□□ -0.78
CLN3-235ENST00000568497 LINC00305Q7Z4B0 112 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 GGACTQ9BVM4 153 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 HSPB11Q9Y547 144 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 PXMP4Q9Y6I8 212 aa10.15□□□□□ -0.78
CLN3-235ENST00000568497 TRAV8-2A0A0B4J237 113 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 FNDC10F2Z333 226 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 GIG44P09565 113 aaPredicted RBP10.14□□□□□ -0.79
CLN3-235ENST00000568497 PRR20EP86478 221 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 PRR20CP86479 221 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 PRR20DP86480 221 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 PRR20BP86481 221 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 PRR20AP86496 221 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 LGALS9CQ6DKI2 356 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 ZNF546Q86UE3 836 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 SLC25A31Q9H0C2 315 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 SLC39A9Q9NUM3 307 aa10.14□□□□□ -0.79
CLN3-235ENST00000568497 G3V3Q6 166 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 MRPS12O15235 138 aaKnown RBP10.13□□□□□ -0.79
CLN3-235ENST00000568497 DEFB4AO15263 64 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 CA1P00915 261 aaPredicted RBP10.13□□□□□ -0.79
CLN3-235ENST00000568497 PLP1P60201 277 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 B2MP61769 119 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 HBG1P69891 147 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 HBG2P69892 147 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 STHQ8IWL8 128 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 C16orf92Q96LL3 132 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 NPCDR1Q9BY65 106 aa10.13□□□□□ -0.79
CLN3-235ENST00000568497 TRAV2A0A0B4J234 112 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 SLC17A3O00476 420 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 CD5P06127 495 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 AP2S1P53680 142 aaPredicted RBP10.12□□□□□ -0.79
CLN3-235ENST00000568497 SELENOTP62341 195 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 C10orf113Q5VZT2 155 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 MIR17HGQ75NE6 70 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 TRPT1Q86TN4 253 aaKnown RBP10.12□□□□□ -0.79
CLN3-235ENST00000568497 KRTAP4-5Q9BYR2 181 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 WDR61Q9GZS3 305 aaKnown RBP10.12□□□□□ -0.79
CLN3-235ENST00000568497 FBXL17Q9UF56 701 aa10.12□□□□□ -0.79
CLN3-235ENST00000568497 FXYD6-FXYD2A0A087WZ82 144 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 ZNF705FA8MVS1 300 aaPredicted RBP10.11□□□□□ -0.79
CLN3-235ENST00000568497 H3BQ15 152 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 CFDP00746 253 aaPredicted RBP10.11□□□□□ -0.79
CLN3-235ENST00000568497 PYYP10082 97 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 ATF4P18848 351 aaPredicted RBP10.11□□□□□ -0.79
CLN3-235ENST00000568497 GALR1P47211 349 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 ATP6V1FQ16864 119 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 C1orf194Q5T5A4 169 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 ATP5SQ99766 215 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 CSTL1Q9H114 145 aa10.11□□□□□ -0.79
CLN3-235ENST00000568497 DNAJC4Q9NNZ3 241 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms