RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 COX7A2P2O60397 106 aa14.48□□□□□ -0.09
CLN3-225ENST00000566824 DEFB131AP59861 70 aa14.48□□□□□ -0.09
CLN3-225ENST00000566824 B2MP61769 119 aa14.48□□□□□ -0.09
CLN3-225ENST00000566824 RSG1Q9BU20 258 aa14.48□□□□□ -0.09
CLN3-225ENST00000566824 TNFSF18Q9UNG2 199 aa14.48□□□□□ -0.09
CLN3-225ENST00000566824 TRAV5A0A0B4J249 113 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 SOCS3O14543 225 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 MPDU1O75352 247 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 AP2S1P53680 142 aaPredicted RBP14.47□□□□□ -0.09
CLN3-225ENST00000566824 HAGHQ16775 308 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 PXDC1Q5TGL8 231 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 LINC00305Q7Z4B0 112 aa14.47□□□□□ -0.09
CLN3-225ENST00000566824 MRPS12O15235 138 aaKnown RBP14.46□□□□□ -0.09
CLN3-225ENST00000566824 DEFB1P60022 68 aa14.46□□□□□ -0.09
CLN3-225ENST00000566824 C10orf113Q5VZT2 155 aa14.46□□□□□ -0.09
CLN3-225ENST00000566824 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.46□□□□□ -0.09
CLN3-225ENST00000566824 FAM110AQ9BQ89 295 aa14.46□□□□□ -0.09
CLN3-225ENST00000566824 DNAJC4Q9NNZ3 241 aa14.46□□□□□ -0.09
CLN3-225ENST00000566824 hCG_2014768A0A024R1R8 64 aa14.45□□□□□ -0.1
CLN3-225ENST00000566824 SNRPCP09234 159 aaKnown RBP14.45□□□□□ -0.1
CLN3-225ENST00000566824 OR11H4Q8NGC9 324 aa14.45□□□□□ -0.1
CLN3-225ENST00000566824 PSMG4Q5JS54 123 aa14.44□□□□□ -0.1
CLN3-225ENST00000566824 SPATA31B1PQ5VZV4 182 aa14.44□□□□□ -0.1
CLN3-225ENST00000566824 Q6ZRG5 221 aa14.44□□□□□ -0.1
CLN3-225ENST00000566824 ELOA3CA0A087WX78 387 aaPredicted RBP14.43□□□□□ -0.1
CLN3-225ENST00000566824 KNCNA6PVL3 124 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 IFNA5P01569 189 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 RPL35AP18077 110 aaKnown RBP14.43□□□□□ -0.1
CLN3-225ENST00000566824 GALR1P47211 349 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 IGFL4Q6B9Z1 124 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 ST6GAL2Q96JF0 529 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 C20orf173Q96LM9 149 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 RETNQ9HD89 108 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 STAB2Q8WWQ8 2551 aa14.43□□□□□ -0.1
CLN3-225ENST00000566824 A0A1B0GVG6 124 aa14.42□□□□□ -0.1
CLN3-225ENST00000566824 ARPC5O15511 151 aa14.42□□□□□ -0.1
CLN3-225ENST00000566824 ZNF709Q8N972 641 aa14.42□□□□□ -0.1
CLN3-225ENST00000566824 INO80EQ8NBZ0 244 aaPredicted RBP14.42□□□□□ -0.1
CLN3-225ENST00000566824 OR1L4Q8NGR5 311 aa14.42□□□□□ -0.1
CLN3-225ENST00000566824 SCGB1C1Q8TD33 95 aa14.42□□□□□ -0.1
CLN3-225ENST00000566824 PARD6GQ9BYG4 376 aaPredicted RBP14.42□□□□□ -0.1
CLN3-225ENST00000566824 TRAV8-2A0A0B4J237 113 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 H3BTX0 84 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 CMC4P56277 68 aaPredicted RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 GPR82Q96P67 336 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 TM2D3Q9BRN9 247 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 SEPSECSQ9HD40 501 aaKnown RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 LOC102724200A0A096LPH7 203 aaPredicted RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 PRB4P10163 310 aaPredicted RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 RPL7P18124 248 aaKnown RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 FFAR4Q5NUL3 377 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 RPL7L1Q6DKI1 246 aaKnown RBP14.41□□□□□ -0.1
CLN3-225ENST00000566824 MIR17HGQ75NE6 70 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 GATAD1Q8WUU5 269 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 LINC00052Q96N35 136 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 PFDN5Q99471 154 aa14.41□□□□□ -0.1
CLN3-225ENST00000566824 C17orf112F2Z3M2 114 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 H3BQ15 152 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 EIF3GO75821 320 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLN3-225ENST00000566824 ATF4P18848 351 aaPredicted RBP14.4□□□□□ -0.1
CLN3-225ENST00000566824 HLA-DMBP28068 263 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 S100A7P31151 101 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 GDF5OSQ5U4N7 250 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 RNF182Q8N6D2 247 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 HSD17B11Q8NBQ5 300 aa14.4□□□□□ -0.1
CLN3-225ENST00000566824 A0A087X0K7 114 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 NHLRC4P0CG21 123 aaPredicted RBP14.39□□□□□ -0.11
CLN3-225ENST00000566824 PSMB3P49720 205 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 SNRPD3P62318 126 aaKnown RBP14.39□□□□□ -0.11
CLN3-225ENST00000566824 ACTL10Q5JWF8 245 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 FAM78BQ5VT40 261 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 FAM167A-AS1Q96KT0 104 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 C16orf92Q96LL3 132 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 SLC25A2Q9BXI2 301 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 MFFQ9GZY8 342 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 SH3BGRL3Q9H299 93 aa14.39□□□□□ -0.11
CLN3-225ENST00000566824 F6UB75 175 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 SLC17A3O00476 420 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 ISLRO14498 428 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 IGLC2P0DOY2 106 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 CD300CQ08708 224 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 S100A7AQ86SG5 101 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 CYTL1Q9NRR1 136 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 KCNIP2Q9NS61 270 aa14.38□□□□□ -0.11
CLN3-225ENST00000566824 PYYP10082 97 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 CXCL2P19875 107 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 ATP6V0CP27449 155 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 ID1P41134 155 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 MEOX2P50222 304 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 RAB2AP61019 212 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 TRPT1Q86TN4 253 aaKnown RBP14.37□□□□□ -0.11
CLN3-225ENST00000566824 BPIFA4PQ86YQ2 179 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 ZNF586Q9NXT0 402 aa14.37□□□□□ -0.11
CLN3-225ENST00000566824 ZNF266Q14584 549 aa14.36□□□□□ -0.11
CLN3-225ENST00000566824 TIMM9Q9Y5J7 89 aa14.36□□□□□ -0.11
CLN3-225ENST00000566824 GIG44P09565 113 aaPredicted RBP14.35□□□□□ -0.11
CLN3-225ENST00000566824 STHQ8IWL8 128 aa14.35□□□□□ -0.11
CLN3-225ENST00000566824 KCNRGQ8N5I3 272 aa14.35□□□□□ -0.11
CLN3-225ENST00000566824 ZNF503Q96F45 646 aa14.35□□□□□ -0.11
CLN3-225ENST00000566824 FUT9Q9Y231 359 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms