RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SNRPD3P62318 126 aaKnown RBP12.36□□□□□ -0.43
CLK3-207ENST00000562389 SAMD13Q5VXD3 122 aa12.36□□□□□ -0.43
CLK3-207ENST00000562389 LEMD1Q68G75 181 aa12.36□□□□□ -0.43
CLK3-207ENST00000562389 WDR61Q9GZS3 305 aaKnown RBP12.36□□□□□ -0.43
CLK3-207ENST00000562389 SLC39A9Q9NUM3 307 aa12.36□□□□□ -0.43
CLK3-207ENST00000562389 PXMP4Q9Y6I8 212 aa12.36□□□□□ -0.43
CLK3-207ENST00000562389 KIR2DL5BA0A0G2JN68 375 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 KIR2DL5BA0A0G2JPC4 375 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 RPL7P18124 248 aaKnown RBP12.35□□□□□ -0.43
CLK3-207ENST00000562389 MEOX2P50222 304 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 APOC4P55056 127 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 C10orf113Q5VZT2 155 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 LINC00305Q7Z4B0 112 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 KIR2DL5AQ8N109 375 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 OR1L4Q8NGR5 311 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 KIR2DL5BQ8NHK3 375 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 TMEM37Q8WXS4 190 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 PFDN5Q99471 154 aa12.35□□□□□ -0.43
CLK3-207ENST00000562389 ID1P41134 155 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 PSMB3P49720 205 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 Q5BKY6 102 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 PSMG4Q5JS54 123 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 C17orf77Q96MU5 243 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 RCHY1Q96PM5 261 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 AQP10Q96PS8 301 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 DNAJC4Q9NNZ3 241 aa12.34□□□□□ -0.43
CLK3-207ENST00000562389 HUWE1Q7Z6Z7 4374 aaKnown RBP12.33□□□□□ -0.44
CLK3-207ENST00000562389 UBE2CO00762 179 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 ISLRO14498 428 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 RPL35AP18077 110 aaKnown RBP12.33□□□□□ -0.44
CLK3-207ENST00000562389 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 RSG1Q9BU20 258 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 PARD6GQ9BYG4 376 aaPredicted RBP12.33□□□□□ -0.44
CLK3-207ENST00000562389 SMIM3Q9BZL3 60 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 KCNIP2Q9NS61 270 aa12.33□□□□□ -0.44
CLK3-207ENST00000562389 A0A087X0K7 114 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 C17orf112F2Z3M2 114 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 MRPS12O15235 138 aaKnown RBP12.32□□□□□ -0.44
CLK3-207ENST00000562389 IFNA5P01569 189 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 ATF4P18848 351 aaPredicted RBP12.32□□□□□ -0.44
CLK3-207ENST00000562389 STHQ8IWL8 128 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 ZNF709Q8N972 641 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 OR2T35Q8NGX2 323 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 GATAD1Q8WUU5 269 aa12.32□□□□□ -0.44
CLK3-207ENST00000562389 COL7A1Q02388 2944 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 MORN5Q5VZ52 161 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 TRPT1Q86TN4 253 aaKnown RBP12.31□□□□□ -0.44
CLK3-207ENST00000562389 BPIFA4PQ86YQ2 179 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 C16orf92Q96LL3 132 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 WFDC1Q9HC57 220 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 RETNQ9HD89 108 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 AGRNO00468 2067 aa12.31□□□□□ -0.44
CLK3-207ENST00000562389 KNCNA6PVL3 124 aa12.3□□□□□ -0.44
CLK3-207ENST00000562389 G3V3Q6 166 aa12.3□□□□□ -0.44
CLK3-207ENST00000562389 Q6ZWC4 215 aa12.3□□□□□ -0.44
CLK3-207ENST00000562389 SCGB1C1Q8TD33 95 aa12.3□□□□□ -0.44
CLK3-207ENST00000562389 CSTL1Q9H114 145 aa12.3□□□□□ -0.44
CLK3-207ENST00000562389 FXYD6-FXYD2A0A087WZ82 144 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 CXCL2P19875 107 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 ACTL10Q5JWF8 245 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 INO80EQ8NBZ0 244 aaPredicted RBP12.29□□□□□ -0.44
CLK3-207ENST00000562389 LINC00052Q96N35 136 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 TNFSF18Q9UNG2 199 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 TP53TG1Q9Y2A0 90 aa12.29□□□□□ -0.44
CLK3-207ENST00000562389 RNF222A6NCQ9 220 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 HLA-DRB4P13762 266 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 ZNF266Q14584 549 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 GCSAMLQ5JQS6 135 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 FOXI2Q6ZQN5 318 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 C20orf173Q96LM9 149 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 WWC2-AS2Q96NR7 200 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 SAV1Q9H4B6 383 aaPredicted RBP12.28□□□□□ -0.44
CLK3-207ENST00000562389 HLA-DRB4X5D2U9 266 aa12.28□□□□□ -0.44
CLK3-207ENST00000562389 TRAV8-2A0A0B4J237 113 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 TRAV5A0A0B4J249 113 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 H3BMM0 161 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 SPP1P10451 314 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 DEFB135Q30KP9 77 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 MORN3Q6PF18 240 aaPredicted RBP12.27□□□□□ -0.45
CLK3-207ENST00000562389 LCN15Q6UWW0 184 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 OVOL2Q9BRP0 275 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 RPRMQ9NS64 109 aa12.27□□□□□ -0.45
CLK3-207ENST00000562389 CA1P00915 261 aaPredicted RBP12.26□□□□□ -0.45
CLK3-207ENST00000562389 IGLC2P0DOY2 106 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 FAM78BQ5VT40 261 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 SPATA31B1PQ5VZV4 182 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 RNF183Q96D59 192 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 SLC50A1Q9BRV3 221 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 MRPL32Q9BYC8 188 aaKnown RBP12.26□□□□□ -0.45
CLK3-207ENST00000562389 HRH4Q9H3N8 390 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 TMEM14CQ9P0S9 112 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 TIMM9Q9Y5J7 89 aa12.26□□□□□ -0.45
CLK3-207ENST00000562389 SPRY2O43597 315 aa12.25□□□□□ -0.45
CLK3-207ENST00000562389 TMEM41BQ5BJD5 291 aa12.25□□□□□ -0.45
CLK3-207ENST00000562389 FFAR4Q5NUL3 377 aa12.25□□□□□ -0.45
CLK3-207ENST00000562389 GDF5OSQ5U4N7 250 aa12.25□□□□□ -0.45
CLK3-207ENST00000562389 LRRC20Q8TCA0 184 aa12.25□□□□□ -0.45
CLK3-207ENST00000562389 A0A0J9YX75 114 aa12.24□□□□□ -0.45
CLK3-207ENST00000562389 DEFB1P60022 68 aa12.24□□□□□ -0.45
CLK3-207ENST00000562389 GUK1Q16774 197 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms