RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 C7orf50Q9BRJ6 194 aaKnown RBP13.54□□□□□ -0.24
VPS35-202ENST00000561713 TMEM147Q9BVK8 224 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 RFNGQ9Y644 331 aa13.54□□□□□ -0.24
VPS35-202ENST00000561713 HTN3P15516 51 aa13.53□□□□□ -0.24
VPS35-202ENST00000561713 INPP1P49441 399 aa13.53□□□□□ -0.24
VPS35-202ENST00000561713 RRAS2P62070 204 aaPredicted RBP13.53□□□□□ -0.24
VPS35-202ENST00000561713 RPP30P78346 268 aaKnown RBP13.53□□□□□ -0.24
VPS35-202ENST00000561713 NDUFAF3Q9BU61 184 aa13.53□□□□□ -0.24
VPS35-202ENST00000561713 RPRMQ9NS64 109 aa13.53□□□□□ -0.24
VPS35-202ENST00000561713 LOC102723971A0A1B0GUV8 181 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 NDUFB6O95139 128 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 SCGB1D2O95969 90 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 SPART-AS1P0CW21 52 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 ANXA7P20073 488 aaKnown RBP13.52□□□□□ -0.25
VPS35-202ENST00000561713 MEOX2P50222 304 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 UBE2MP61081 183 aaKnown RBP13.52□□□□□ -0.25
VPS35-202ENST00000561713 FGL1Q08830 312 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 AMTNQ6UX39 209 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 DEDD2Q8WXF8 326 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 PSENENQ9NZ42 101 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 DKK2Q9UBU2 259 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 GOLT1BQ9Y3E0 138 aa13.52□□□□□ -0.25
VPS35-202ENST00000561713 TRAV8-2A0A0B4J237 113 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 H3BRN7 92 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 M0R2Z0 102 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 PRM2P04554 102 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 BTCP35070 178 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 SPINK13Q1W4C9 94 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 CYP2G1PQ6ZSU1 146 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 OR4D5Q8NGN0 318 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 CLUHP3Q96NS8 147 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 UHRF2Q96PU4 802 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 SDHCQ99643 169 aaPredicted RBP13.51□□□□□ -0.25
VPS35-202ENST00000561713 SLC45A2Q9UMX9 530 aa13.51□□□□□ -0.25
VPS35-202ENST00000561713 YTHDF2Q9Y5A9 579 aaKnown RBP13.51□□□□□ -0.25
VPS35-202ENST00000561713 TMEM189A5PLL7 270 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 SMIM9A6NGZ8 99 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 CFDP00746 253 aaPredicted RBP13.5□□□□□ -0.25
VPS35-202ENST00000561713 HBE1P02100 147 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 METTL15P1P0C7V9 234 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 LINC00869P0C866 280 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 CNN1P51911 297 aaKnown RBP13.5□□□□□ -0.25
VPS35-202ENST00000561713 LGALS9BQ3B8N2 356 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 TMEM144Q7Z5S9 345 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 BAP18Q8IXM2 172 aa13.5□□□□□ -0.25
VPS35-202ENST00000561713 SLC25A39Q9BZJ4 359 aaPredicted RBP13.5□□□□□ -0.25
VPS35-202ENST00000561713 PMS2P5A8MQ11 134 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 IL5P05113 134 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 OR4E1P0C645 316 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 ID3Q02535 119 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 SLC38A11Q08AI6 406 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 C4orf46Q504U0 113 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 SAMD13Q5VXD3 122 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 SPATA31B1PQ5VZV4 182 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 OR11H7Q8NGC8 314 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 NIPSNAP3BQ9BS92 247 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 TMEM208Q9BTX3 173 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 HIGD1AQ9Y241 93 aa13.49□□□□□ -0.25
VPS35-202ENST00000561713 IGLV2-18A0A075B6J9 118 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 A8MTW9 85 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 OR5G3P0C626 314 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 RRN3P1Q2M238 152 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 ZNF575Q86XF7 245 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 ZNF738Q8NE65 137 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 SHANK2-AS3Q9BTD1 123 aa13.48□□□□□ -0.25
VPS35-202ENST00000561713 ZNF705GA8MUZ8 300 aaPredicted RBP13.47□□□□□ -0.25
VPS35-202ENST00000561713 RAP2BP61225 183 aa13.47□□□□□ -0.25
VPS35-202ENST00000561713 UBE2DNLQ8IWF7 75 aa13.47□□□□□ -0.25
VPS35-202ENST00000561713 IGF2BP2-AS1Q96M15 143 aa13.47□□□□□ -0.25
VPS35-202ENST00000561713 RCL1Q9Y2P8 373 aaKnown RBP13.47□□□□□ -0.25
VPS35-202ENST00000561713 TRAV12-2A0A075B6T6 113 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 NAP1L6A6NFF2 107 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 CCSO14618 274 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 CRXO43186 299 aaPredicted RBP13.46□□□□□ -0.25
VPS35-202ENST00000561713 INSP01308 110 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 IFNA21P01568 189 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 SNRPCP09234 159 aaKnown RBP13.46□□□□□ -0.25
VPS35-202ENST00000561713 IAH1Q2TAA2 248 aaPredicted RBP13.46□□□□□ -0.25
VPS35-202ENST00000561713 Q6ZR54 194 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 GPR82Q96P67 336 aa13.46□□□□□ -0.25
VPS35-202ENST00000561713 HYPMO75409 117 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 DAD1P61803 113 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 DLK1P80370 383 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 HIST1H1AQ02539 215 aaPredicted RBP13.45□□□□□ -0.26
VPS35-202ENST00000561713 ARL16Q0P5N6 197 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 TMEM88Q6PEY1 159 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 TMEM14EPQ6UXP3 125 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 ZBTB8BQ8NAP8 495 aaPredicted RBP13.45□□□□□ -0.26
VPS35-202ENST00000561713 SMIM8Q96KF7 97 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 ARL6Q9H0F7 186 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 GSKIPQ9P0R6 139 aa13.45□□□□□ -0.26
VPS35-202ENST00000561713 TEX48A0A1B0GUV7 120 aa13.44□□□□□ -0.26
VPS35-202ENST00000561713 ZNF701M0R085 212 aaPredicted RBP13.44□□□□□ -0.26
VPS35-202ENST00000561713 IL7P13232 177 aa13.44□□□□□ -0.26
VPS35-202ENST00000561713 RPL7P18124 248 aaKnown RBP13.44□□□□□ -0.26
VPS35-202ENST00000561713 LRP1BQ9NZR2 4599 aa13.44□□□□□ -0.26
VPS35-202ENST00000561713 BOLA2-SMG1P6H3BVE0 249 aa13.43□□□□□ -0.26
VPS35-202ENST00000561713 DUSP14O95147 198 aaKnown RBP13.43□□□□□ -0.26
VPS35-202ENST00000561713 PATE2Q6UY27 113 aa13.43□□□□□ -0.26
VPS35-202ENST00000561713 C20orf85Q9H1P6 137 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms