RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HIVEP1P15822 2718 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 A0A1W2PRE2 83 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 TMEM89A2RUT3 159 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 ZNF727A8MUV8 499 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 NDUFB4O95168 129 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 CRYBA1P05813 215 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 NBEAP1P0C6P0 100 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 SUMO1P63165 101 aaKnown RBP16.4■□□□□ 0.22
CLN3-209ENST00000561689 Q6ZSV7 163 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 NIPSNAP3BQ9BS92 247 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 PARLQ9H300 379 aa16.4■□□□□ 0.22
CLN3-209ENST00000561689 F6UZH7 168 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 RANP62826 216 aaKnown RBP16.39■□□□□ 0.21
CLN3-209ENST00000561689 RHEBQ15382 184 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 S100A7AQ86SG5 101 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 SMIM7Q9BQ49 75 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 DERL1Q9BUN8 251 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 TMEM14CQ9P0S9 112 aa16.39■□□□□ 0.21
CLN3-209ENST00000561689 CLDN34H7C241 214 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 ZNF207O43670 478 aaKnown RBP16.38■□□□□ 0.21
CLN3-209ENST00000561689 FOXE3Q13461 319 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 BPIFA4PQ86YQ2 179 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 ZNF418Q8TF45 676 aaPredicted RBP16.38■□□□□ 0.21
CLN3-209ENST00000561689 CLPSL1A2RUU4 121 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 NDUFS6O75380 124 aaKnown RBP16.38■□□□□ 0.21
CLN3-209ENST00000561689 RPL15P61313 204 aaKnown RBP16.38■□□□□ 0.21
CLN3-209ENST00000561689 C15orf54Q8N8G6 183 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 HIST1H2BAQ96A08 127 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 ZNF586Q9NXT0 402 aa16.38■□□□□ 0.21
CLN3-209ENST00000561689 INAFM1C9JVW0 142 aa16.37■□□□□ 0.21
CLN3-209ENST00000561689 ELANEP08246 267 aa16.37■□□□□ 0.21
CLN3-209ENST00000561689 HIST1H1EP10412 219 aaKnown RBP16.37■□□□□ 0.21
CLN3-209ENST00000561689 UNQ9165/PRO28630Q6UXU0 137 aa16.37■□□□□ 0.21
CLN3-209ENST00000561689 ELOVL1Q9BW60 279 aa16.37■□□□□ 0.21
CLN3-209ENST00000561689 MLXQ9UH92 298 aa16.37■□□□□ 0.21
CLN3-209ENST00000561689 IGHV3-66A0A0C4DH42 116 aa16.36■□□□□ 0.21
CLN3-209ENST00000561689 RNASE1P07998 156 aaKnown RBP16.36■□□□□ 0.21
CLN3-209ENST00000561689 CRYBB3P26998 211 aa16.36■□□□□ 0.21
CLN3-209ENST00000561689 FLI1Q01543 452 aaPredicted RBP16.36■□□□□ 0.21
CLN3-209ENST00000561689 OR4F17Q8NGA8 305 aa16.36■□□□□ 0.21
CLN3-209ENST00000561689 PEF1Q9UBV8 284 aaKnown RBP16.36■□□□□ 0.21
CLN3-209ENST00000561689 IGHV3OR16-13A0A075B7E8 117 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 IGHV3-49A0A0A0MS15 119 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 IGHV3-74A0A0B4J1X5 117 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 MRPS12O15235 138 aaKnown RBP16.35■□□□□ 0.21
CLN3-209ENST00000561689 HILS1P60008 231 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 KLHDC1Q8N7A1 406 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 TVP23CQ96ET8 276 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 C17orf77Q96MU5 243 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 TUBA4BQ9H853 241 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 APOHP02749 345 aaPredicted RBP16.35■□□□□ 0.21
CLN3-209ENST00000561689 IGLC2P0DOY2 106 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 FOSL1P15407 271 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 OR8I2Q8N0Y5 310 aa16.35■□□□□ 0.21
CLN3-209ENST00000561689 GGCTO75223 188 aaKnown RBP16.34■□□□□ 0.21
CLN3-209ENST00000561689 ZFP82Q8N141 532 aa16.34■□□□□ 0.21
CLN3-209ENST00000561689 MYOZ3Q8TDC0 251 aa16.34■□□□□ 0.21
CLN3-209ENST00000561689 C11orf52Q96A22 123 aa16.34■□□□□ 0.21
CLN3-209ENST00000561689 METTL26Q96S19 204 aa16.34■□□□□ 0.21
CLN3-209ENST00000561689 PGPA6NDG6 321 aa16.33■□□□□ 0.21
CLN3-209ENST00000561689 NDUFA4O00483 81 aa16.33■□□□□ 0.21
CLN3-209ENST00000561689 MYCNOSP40205 109 aa16.33■□□□□ 0.21
CLN3-209ENST00000561689 TMEM241Q24JQ0 296 aa16.33■□□□□ 0.21
CLN3-209ENST00000561689 FAM209BQ5JX69 171 aa16.33■□□□□ 0.21
CLN3-209ENST00000561689 TRBV19A0A075B6N1 114 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 ZNF320A2RRD8 509 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 BUB3O43684 328 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 FAM24BQ8N5W8 94 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 RNF152Q8N8N0 203 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 Q9H3A6 140 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 SDF2L1Q9HCN8 221 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 NAT8Q9UHE5 227 aa16.33■□□□□ 0.2
CLN3-209ENST00000561689 BAHCC1Q9P281 2608 aa16.32■□□□□ 0.2
CLN3-209ENST00000561689 RPL7P18124 248 aaKnown RBP16.32■□□□□ 0.2
CLN3-209ENST00000561689 S100A7P31151 101 aa16.32■□□□□ 0.2
CLN3-209ENST00000561689 EXOC3-AS1Q8N2X6 119 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 C2CD4CQ8TF44 421 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 YPEL4Q96NS1 127 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 TRBV20OR9-2A0A075B6H5 130 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 SLC17A3O00476 420 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 MT-ND4LP03901 98 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 FOLR2P14207 255 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 RPL35P42766 123 aaKnown RBP16.31■□□□□ 0.2
CLN3-209ENST00000561689 GNG5P63218 68 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 UBE2E2Q96LR5 201 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 RNF24Q9Y225 148 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 SMAD5-AS1Q9Y6J3 95 aa16.31■□□□□ 0.2
CLN3-209ENST00000561689 SLC25A5P05141 298 aaKnown RBP16.3■□□□□ 0.2
CLN3-209ENST00000561689 ADIRFQ15847 76 aa16.3■□□□□ 0.2
CLN3-209ENST00000561689 TCTEX1D4Q5JR98 221 aa16.3■□□□□ 0.2
CLN3-209ENST00000561689 SAV1Q9H4B6 383 aaPredicted RBP16.3■□□□□ 0.2
CLN3-209ENST00000561689 AURKAIP1Q9NWT8 199 aaPredicted RBP16.3■□□□□ 0.2
CLN3-209ENST00000561689 PGPEP1LA6NFU8 196 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 LGALS1P09382 135 aaKnown RBP16.29■□□□□ 0.2
CLN3-209ENST00000561689 HIST2H2BDQ6DRA6 164 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 TMEM190Q8WZ59 177 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 LINC00479Q96M42 142 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 U3KQE9 123 aa16.29■□□□□ 0.2
CLN3-209ENST00000561689 SETXQ7Z333 2677 aaKnown RBP16.29■□□□□ 0.2
CLN3-209ENST00000561689 NSD1Q96L73 2696 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms