RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 GPR141Q7Z602 305 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 PPP1R14BQ96C90 147 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 TMEM208Q9BTX3 173 aa11.48□□□□□ -0.57
CLN3-208ENST00000561505 M0R2Z0 102 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 IL18Q14116 193 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 SPINK13Q1W4C9 94 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 TMEM128Q5BJH2 165 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 Q8N1X5 172 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 DIRAS2Q96HU8 199 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 CIB3Q96Q77 187 aaPredicted RBP11.47□□□□□ -0.57
CLN3-208ENST00000561505 ATG101Q9BSB4 218 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 LINC00588Q9Y4M8 146 aa11.47□□□□□ -0.57
CLN3-208ENST00000561505 H3BRN7 92 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 ATP5G1P05496 136 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 ATP5G3P48201 142 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 PLP1P60201 277 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 TMEM256Q8N2U0 113 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 BPIFCQ8NFQ6 507 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 DYNC2LI1Q8TCX1 351 aa11.46□□□□□ -0.57
CLN3-208ENST00000561505 RSL24D1Q9UHA3 163 aaKnown RBP11.46□□□□□ -0.57
CLN3-208ENST00000561505 BOLA2-SMG1P6H3BVE0 249 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 SYNGR2O43760 224 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 MED6O75586 246 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 DEFB130BP0DP73 79 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 DEFB130AP0DP74 79 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 IAPPP10997 89 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 GATA2P23769 480 aaPredicted RBP11.45□□□□□ -0.58
CLN3-208ENST00000561505 S100A7P31151 101 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 C4orf46Q504U0 113 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 LINC00612Q8N6U2 182 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 MAPKAPK5-AS1Q8N8E1 139 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 SLC25A22Q9H936 323 aa11.45□□□□□ -0.58
CLN3-208ENST00000561505 CCDC59Q9P031 241 aaKnown RBP11.45□□□□□ -0.58
CLN3-208ENST00000561505 A0A087X0K7 114 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 CXCL3P19876 107 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 CCL18P55774 89 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 TAS2R60P59551 318 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 RPP30P78346 268 aaKnown RBP11.44□□□□□ -0.58
CLN3-208ENST00000561505 TMEM144Q7Z5S9 345 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 BAP18Q8IXM2 172 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 RNF141Q8WVD5 230 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 ZNF503Q96F45 646 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 SHANK2-AS3Q9BTD1 123 aa11.44□□□□□ -0.58
CLN3-208ENST00000561505 SLC25A39Q9BZJ4 359 aaPredicted RBP11.44□□□□□ -0.58
CLN3-208ENST00000561505 F5H768 121 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 ORM2P19652 201 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 BTF3P20290 206 aaKnown RBP11.43□□□□□ -0.58
CLN3-208ENST00000561505 FCN2Q15485 313 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 IGFL4Q6B9Z1 124 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 ZNF493Q6ZR52 646 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 ACOT7LQ6ZUV0 252 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 OR8A1Q8NGG7 326 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 TMEM147Q9BVK8 224 aa11.43□□□□□ -0.58
CLN3-208ENST00000561505 PMS2P5A8MQ11 134 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 MRPS12O15235 138 aaKnown RBP11.42□□□□□ -0.58
CLN3-208ENST00000561505 RPL7P18124 248 aaKnown RBP11.42□□□□□ -0.58
CLN3-208ENST00000561505 RNASE8Q8TDE3 154 aaKnown RBP11.42□□□□□ -0.58
CLN3-208ENST00000561505 C16orf74Q96GX8 76 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 BCL7BQ9BQE9 202 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 UPK3BQ9BT76 320 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 KRTAP1-5Q9BYS1 174 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 SLIRPQ9GZT3 109 aaKnown RBP11.42□□□□□ -0.58
CLN3-208ENST00000561505 MCUBQ9NWR8 336 aa11.42□□□□□ -0.58
CLN3-208ENST00000561505 TIMM8BQ9Y5J9 83 aaPredicted RBP11.42□□□□□ -0.58
CLN3-208ENST00000561505 TRAV12-2A0A075B6T6 113 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 K7EPK0 472 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 NUDT3O95989 172 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 TNFSF8P32971 234 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 ID3Q02535 119 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 PSG3Q16557 428 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 DEDD2Q8WXF8 326 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 TRIM63Q969Q1 353 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 C20orf144Q9BQM9 153 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 Q9H3A6 140 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 Q9H8V8 135 aa11.41□□□□□ -0.58
CLN3-208ENST00000561505 A0A1W2PPQ1 181 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 H3BNG1 76 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 WRBO00258 174 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 SELENOTP62341 195 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 CYP2G1PQ6ZSU1 146 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 SSX7Q7RTT5 188 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 ZNF738Q8NE65 137 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 RAB2BQ8WUD1 216 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 TMEM263Q8WUH6 116 aaKnown RBP11.4□□□□□ -0.58
CLN3-208ENST00000561505 LINC01587Q99440 93 aa11.4□□□□□ -0.58
CLN3-208ENST00000561505 SLC25A21Q9BQT8 299 aaPredicted RBP11.4□□□□□ -0.58
CLN3-208ENST00000561505 FABP12A6NFH5 140 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 FNDC10F2Z333 226 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 SFT2D2O95562 160 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 CDKN1BP46527 198 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 TMBIM6P55061 237 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 RXFP4Q8TDU9 374 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 MRPS26Q9BYN8 205 aaKnown RBP11.39□□□□□ -0.59
CLN3-208ENST00000561505 HIGD1AQ9Y241 93 aa11.39□□□□□ -0.59
CLN3-208ENST00000561505 STRAPQ9Y3F4 350 aaKnown RBP11.39□□□□□ -0.59
CLN3-208ENST00000561505 H7BYZ3 331 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 HYPMO75409 117 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 CXCL2P19875 107 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 FAUP35544 74 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms