RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KIR2DL5BA0A0G2JPC4 375 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 RBMY1BA6NDE4 496 aaKnown RBP9.64□□□□□ -0.87
NEDD8-208ENST00000560427 RBMY1EA6NEQ0 496 aaKnown RBP9.64□□□□□ -0.87
NEDD8-208ENST00000560427 ISLRO14498 428 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 RBMY1DP0C7P1 496 aaKnown RBP9.64□□□□□ -0.87
NEDD8-208ENST00000560427 PSMB3P49720 205 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 APOC4P55056 127 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 DEFB131AP59861 70 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 ZNF266Q14584 549 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 HAGHQ16775 308 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 C10orf113Q5VZT2 155 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 MIC13Q5XKP0 118 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 PATE2Q6UY27 113 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 LINC00305Q7Z4B0 112 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 KIR2DL5AQ8N109 375 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 INO80EQ8NBZ0 244 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-208ENST00000560427 KIR2DL5BQ8NHK3 375 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 GATAD1Q8WUU5 269 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 TMEM37Q8WXS4 190 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 UHRF2Q96PU4 802 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 CITED4Q96RK1 184 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 SPATA25Q9BR10 227 aa9.64□□□□□ -0.87
NEDD8-208ENST00000560427 A0A087X0K7 114 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 UBE2CO00762 179 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 SOCS3O14543 225 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 ZNF688P0C7X2 276 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 ATF4P18848 351 aaPredicted RBP9.63□□□□□ -0.87
NEDD8-208ENST00000560427 APRG1Q8IVJ8 170 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 FAM24BQ8N5W8 94 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 SCGB1C1Q8TD33 95 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 ASCL2Q99929 193 aa9.63□□□□□ -0.87
NEDD8-208ENST00000560427 CXCL2P19875 107 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 Q5BKY6 102 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 PSMG4Q5JS54 123 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 BPIFA4PQ86YQ2 179 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 RSG1Q9BU20 258 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 SMIM3Q9BZL3 60 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 TNFSF18Q9UNG2 199 aa9.62□□□□□ -0.87
NEDD8-208ENST00000560427 FXYD6-FXYD2A0A087WZ82 144 aa9.61□□□□□ -0.87
NEDD8-208ENST00000560427 G3V3Q6 166 aa9.61□□□□□ -0.87
NEDD8-208ENST00000560427 LEMD1Q68G75 181 aa9.61□□□□□ -0.87
NEDD8-208ENST00000560427 TIMM9Q9Y5J7 89 aa9.61□□□□□ -0.87
NEDD8-208ENST00000560427 U3KQK5 164 aa9.61□□□□□ -0.87
NEDD8-208ENST00000560427 RNF222A6NCQ9 220 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 MRPS12O15235 138 aaKnown RBP9.6□□□□□ -0.87
NEDD8-208ENST00000560427 SPATA31B1PQ5VZV4 182 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 Q6ZWC4 215 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 STHQ8IWL8 128 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 C16orf92Q96LL3 132 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 MRPL32Q9BYC8 188 aaKnown RBP9.6□□□□□ -0.87
NEDD8-208ENST00000560427 TP53TG1Q9Y2A0 90 aa9.6□□□□□ -0.87
NEDD8-208ENST00000560427 DNAH9Q9NYC9 4486 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 SPP1P10451 314 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 HLA-DRB4P13762 266 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 ZNF124Q15973 351 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 GUK1Q16774 197 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 TMEM41BQ5BJD5 291 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 LCN15Q6UWW0 184 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 Q6ZNX1 250 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 FOXI2Q6ZQN5 318 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 TRPT1Q86TN4 253 aaKnown RBP9.59□□□□□ -0.87
NEDD8-208ENST00000560427 C17orf77Q96MU5 243 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 RCHY1Q96PM5 261 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 SLC50A1Q9BRV3 221 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 WFDC1Q9HC57 220 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 RPRMQ9NS64 109 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 CLEC5AQ9NY25 188 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 TMEM14CQ9P0S9 112 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 HLA-DRB4X5D2U9 266 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 TGP01266 2768 aa9.59□□□□□ -0.87
NEDD8-208ENST00000560427 TAAR5O14804 337 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 IGLC2P0DOY2 106 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 RPL35AP18077 110 aaKnown RBP9.58□□□□□ -0.88
NEDD8-208ENST00000560427 ZNF345Q14585 488 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 ACTL10Q5JWF8 245 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 FAM78BQ5VT40 261 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 MORN5Q5VZ52 161 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 MORN3Q6PF18 240 aaPredicted RBP9.58□□□□□ -0.88
NEDD8-208ENST00000560427 LINC00052Q96N35 136 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 CLUHP3Q96NS8 147 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 PSMG3Q9BT73 122 aaPredicted RBP9.58□□□□□ -0.88
NEDD8-208ENST00000560427 CSTL1Q9H114 145 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 HRH4Q9H3N8 390 aa9.58□□□□□ -0.88
NEDD8-208ENST00000560427 BORCS7-ASMTA0A0B4J1R7 106 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 ZNF253O75346 499 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 NUTF2P61970 127 aaKnown RBP9.57□□□□□ -0.88
NEDD8-208ENST00000560427 GCSAMLQ5JQS6 135 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 FFAR4Q5NUL3 377 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 EBLN2Q6P2I7 272 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 OR2G3Q8NGZ4 309 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 LRRC20Q8TCA0 184 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 SAV1Q9H4B6 383 aaPredicted RBP9.57□□□□□ -0.88
NEDD8-208ENST00000560427 FUT9Q9Y231 359 aa9.57□□□□□ -0.88
NEDD8-208ENST00000560427 KNCNA6PVL3 124 aa9.56□□□□□ -0.88
NEDD8-208ENST00000560427 HMSDA8MTL9 139 aa9.56□□□□□ -0.88
NEDD8-208ENST00000560427 H3BMM0 161 aa9.56□□□□□ -0.88
NEDD8-208ENST00000560427 ARPC5O15511 151 aa9.56□□□□□ -0.88
NEDD8-208ENST00000560427 TAS2R45P59539 299 aa9.56□□□□□ -0.88
NEDD8-208ENST00000560427 RHOBP62745 196 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms