RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ATP5G3P48201 142 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 C10orf113Q5VZT2 155 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 LRRC75A-AS1Q8N1F1 130 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 DYNAPQ8N1N2 210 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 TTC9CQ8N5M4 171 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 ZNF48Q96MX3 618 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-229ENST00000557348 SLC25A33Q9BSK2 321 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 FBXL7Q9UJT9 491 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 DOPEY2Q9Y3R5 2298 aa10.02□□□□□ -0.81
SHMT2-229ENST00000557348 CBLN1P23435 193 aa10.01□□□□□ -0.81
SHMT2-229ENST00000557348 PLP1P60201 277 aa10.01□□□□□ -0.81
SHMT2-229ENST00000557348 KLF5Q13887 457 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-229ENST00000557348 MLANAQ16655 118 aa10.01□□□□□ -0.81
SHMT2-229ENST00000557348 GNB4Q9HAV0 340 aa10.01□□□□□ -0.81
SHMT2-229ENST00000557348 V9GYV3 84 aa10.01□□□□□ -0.81
SHMT2-229ENST00000557348 SETXQ7Z333 2677 aaKnown RBP10.01□□□□□ -0.81
SHMT2-229ENST00000557348 TRBV20OR9-2A0A075B6H5 130 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 IGKV1D-37A0A075B6S9 117 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 A0A1W2PS18 150 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 GRIFINA4D1Z8 144 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 PSMB11A5LHX3 300 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 I3L2K1 104 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 J3QLI3 93 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 CCL25O15444 150 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 NDUFB8O95169 186 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 MFAP2P55001 183 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 KRTDAPP60985 99 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 SRSF1Q07955 248 aaKnown RBP eCLIP10□□□□□ -0.81
SHMT2-229ENST00000557348 BATFQ16520 125 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 TIGITQ495A1 244 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 STPG4Q8N801 248 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 Q8N9W7 124 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 ALKBH7Q9BT30 221 aaPredicted RBP10□□□□□ -0.81
SHMT2-229ENST00000557348 MEGF9Q9H1U4 602 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 NAT8BQ9UHF3 227 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 RNF24Q9Y225 148 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 PTPN13Q12923 2485 aa10□□□□□ -0.81
SHMT2-229ENST00000557348 HRNRQ86YZ3 2850 aaPredicted RBP10□□□□□ -0.81
SHMT2-229ENST00000557348 A0A1W2PRE2 83 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 OR7C2O60412 319 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 IER3P46695 156 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 TDRG1Q3Y452 100 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 TMEM136Q6ZRR5 245 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 MIR17HGQ75NE6 70 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 SMIM12Q96EX1 92 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 AJUBAQ96IF1 538 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 ST20Q9HBF5 79 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 LRRK2Q5S007 2527 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 SMIM27A0A1W2PRY6 76 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 PMCHP20382 165 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 CD24P25063 80 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 S100A7P31151 101 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 FBLN7Q53RD9 439 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 FAM231DQ6ZW35 169 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 ATP5L2Q7Z4Y8 100 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 PIP4P2Q8N4L2 257 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 OR5T1Q8NG75 326 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 OR4C5Q8NGB2 326 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 MOB4Q9Y3A3 225 aa9.99□□□□□ -0.81
SHMT2-229ENST00000557348 IGLV11-55A0A075B6I3 123 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 TRAV40A0A0B4J280 105 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 IZUMO1RA6ND01 250 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 C3orf79P0CE67 100 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 IGLC1P0CG04 106 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 GNG4P50150 75 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 KLK9Q2XQG4 91 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 SPATA31B1PQ5VZV4 182 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 C12orf54Q6X4T0 127 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 LINC01356Q8N9X3 169 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 C7orf69Q9H7B7 122 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 KLK9Q9UKQ9 250 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 HECTD1Q9ULT8 2610 aa9.98□□□□□ -0.81
SHMT2-229ENST00000557348 IGHV7-81A0A0B4J1V7 117 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 SCO2A0A1W2PP80 73 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 A1L4Q6 167 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 HELTA6NFD8 242 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 K7EIM0 57 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 CRXO43186 299 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 OR2J3O76001 311 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 APELAP0DMC3 54 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 GATA2P23769 480 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 MFAP4P55083 255 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 LOXL1Q08397 574 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 FAM110DQ8TAY7 271 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 ZNF331Q9NQX6 463 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 ZNF355PQ9NSJ1 428 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 SOX21Q9Y651 276 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-229ENST00000557348 RELNP78509 3460 aa9.97□□□□□ -0.81
SHMT2-229ENST00000557348 FCGR2BP31994 310 aaPredicted RBP9.96□□□□□ -0.81
SHMT2-229ENST00000557348 UBE2L3P68036 154 aaKnown RBP9.96□□□□□ -0.81
SHMT2-229ENST00000557348 C21orf62-AS1Q17RA5 79 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 LINC00305Q7Z4B0 112 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 NIT1Q86X76 327 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 RNASE8Q8TDE3 154 aaKnown RBP9.96□□□□□ -0.81
SHMT2-229ENST00000557348 PMCHL2Q9BQD1 86 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 PAXXQ9BUH6 204 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 DERL1Q9BUN8 251 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 HIGD1AQ9Y241 93 aa9.96□□□□□ -0.81
SHMT2-229ENST00000557348 USP9XQ93008 2570 aaPredicted RBP9.96□□□□□ -0.82
SHMT2-229ENST00000557348 A0A1B0GUS0 222 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms