RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ARV1Q9H2C2 271 aa10.07□□□□□ -0.8
SHMT2-228ENST00000557302 SEPSECSQ9HD40 501 aaKnown RBP10.07□□□□□ -0.8
SHMT2-228ENST00000557302 RNF24Q9Y225 148 aa10.07□□□□□ -0.8
SHMT2-228ENST00000557302 U3KQK5 164 aa10.07□□□□□ -0.8
SHMT2-228ENST00000557302 ELOA3CA0A087WX78 387 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-228ENST00000557302 ID1P41134 155 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 B2MP61769 119 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 PSMG4Q5JS54 123 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 LINC00305Q7Z4B0 112 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 OR1L4Q8NGR5 311 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 ATP5SQ99766 215 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 NPCDR1Q9BY65 106 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 SMIM3Q9BZL3 60 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 SLC39A9Q9NUM3 307 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 PXMP4Q9Y6I8 212 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 STAB2Q8WWQ8 2551 aa10.06□□□□□ -0.8
SHMT2-228ENST00000557302 HUWE1Q7Z6Z7 4374 aaKnown RBP10.05□□□□□ -0.8
SHMT2-228ENST00000557302 IFNA5P01569 189 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 RPL35AP18077 110 aaKnown RBP10.05□□□□□ -0.8
SHMT2-228ENST00000557302 RPL7P18124 248 aaKnown RBP10.05□□□□□ -0.8
SHMT2-228ENST00000557302 MEOX2P50222 304 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 APOC4P55056 127 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 SAMD13Q5VXD3 122 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 C10orf113Q5VZT2 155 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 ZNF709Q8N972 641 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 OR2T35Q8NGX2 323 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 TMEM37Q8WXS4 190 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 RCHY1Q96PM5 261 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 PFDN5Q99471 154 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 RSG1Q9BU20 258 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 WDR61Q9GZS3 305 aaKnown RBP10.05□□□□□ -0.8
SHMT2-228ENST00000557302 DNAJC4Q9NNZ3 241 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 KCNIP2Q9NS61 270 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 NBEAL2Q6ZNJ1 2754 aa10.05□□□□□ -0.8
SHMT2-228ENST00000557302 ATF4P18848 351 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-228ENST00000557302 PSMB3P49720 205 aa10.04□□□□□ -0.8
SHMT2-228ENST00000557302 Q5BKY6 102 aa10.04□□□□□ -0.8
SHMT2-228ENST00000557302 KIR2DL5BA0A0G2JN68 375 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 KIR2DL5BA0A0G2JPC4 375 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 C17orf112F2Z3M2 114 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 ISLRO14498 428 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 SOCS3O14543 225 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 STHQ8IWL8 128 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 KIR2DL5AQ8N109 375 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 KIR2DL5BQ8NHK3 375 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 SCGB1C1Q8TD33 95 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 C16orf92Q96LL3 132 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 LINC00052Q96N35 136 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 AQP10Q96PS8 301 aa10.03□□□□□ -0.8
SHMT2-228ENST00000557302 TENM3Q9P273 2699 aa10.02□□□□□ -0.8
SHMT2-228ENST00000557302 FXYD6-FXYD2A0A087WZ82 144 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 KNCNA6PVL3 124 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 UBE2CO00762 179 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 ACTL10Q5JWF8 245 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 BPIFA4PQ86YQ2 179 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 INO80EQ8NBZ0 244 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-228ENST00000557302 GATAD1Q8WUU5 269 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 C17orf77Q96MU5 243 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 WFDC1Q9HC57 220 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 RETNQ9HD89 108 aa10.02□□□□□ -0.81
SHMT2-228ENST00000557302 KMT2CQ8NEZ4 4911 aaKnown RBP10.02□□□□□ -0.81
SHMT2-228ENST00000557302 A0A087X0K7 114 aa10.01□□□□□ -0.81
SHMT2-228ENST00000557302 MORN5Q5VZ52 161 aa10.01□□□□□ -0.81
SHMT2-228ENST00000557302 PARD6GQ9BYG4 376 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-228ENST00000557302 CSTL1Q9H114 145 aa10.01□□□□□ -0.81
SHMT2-228ENST00000557302 MRPS12O15235 138 aaKnown RBP10□□□□□ -0.81
SHMT2-228ENST00000557302 ZNF266Q14584 549 aa10□□□□□ -0.81
SHMT2-228ENST00000557302 GCSAMLQ5JQS6 135 aa10□□□□□ -0.81
SHMT2-228ENST00000557302 Q6ZWC4 215 aa10□□□□□ -0.81
SHMT2-228ENST00000557302 TRPT1Q86TN4 253 aaKnown RBP10□□□□□ -0.81
SHMT2-228ENST00000557302 TRAV5A0A0B4J249 113 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 RNF222A6NCQ9 220 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 G3V3Q6 166 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 DEFB135Q30KP9 77 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 FAM78BQ5VT40 261 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 LCN15Q6UWW0 184 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 FOXI2Q6ZQN5 318 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 LRRC20Q8TCA0 184 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 WWC2-AS2Q96NR7 200 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 RPRMQ9NS64 109 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 TNFSF18Q9UNG2 199 aa9.99□□□□□ -0.81
SHMT2-228ENST00000557302 TRAV8-2A0A0B4J237 113 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 H3BMM0 161 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 CA1P00915 261 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-228ENST00000557302 SPP1P10451 314 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 HLA-DRB4P13762 266 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 CXCL2P19875 107 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 FFAR4Q5NUL3 377 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 IGFL4Q6B9Z1 124 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 MORN3Q6PF18 240 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-228ENST00000557302 C20orf173Q96LM9 149 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 OVOL2Q9BRP0 275 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 MRPL32Q9BYC8 188 aaKnown RBP9.98□□□□□ -0.81
SHMT2-228ENST00000557302 SAV1Q9H4B6 383 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-228ENST00000557302 TP53TG1Q9Y2A0 90 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 HLA-DRB4X5D2U9 266 aa9.98□□□□□ -0.81
SHMT2-228ENST00000557302 SMLR1H3BR10 107 aa9.97□□□□□ -0.81
SHMT2-228ENST00000557302 SPRY2O43597 315 aa9.97□□□□□ -0.81
SHMT2-228ENST00000557302 SNRPCP09234 159 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms