RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 C16orf92Q96LL3 132 aa15.1■□□□□ 0.01
CCDC88C-210ENST00000555995 LINC00052Q96N35 136 aa15.1■□□□□ 0.01
CCDC88C-210ENST00000555995 KMT2CQ8NEZ4 4911 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 ELOA3CA0A087WX78 387 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 H3BMM0 161 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 PET100P0DJ07 73 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 CAMLGP49069 296 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 EBLN2Q6P2I7 272 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 TMEM252Q8N6L7 170 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 CLUHP3Q96NS8 147 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 RSG1Q9BU20 258 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 SCRT1Q9BWW7 348 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 SLC25A31Q9H0C2 315 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 ARV1Q9H2C2 271 aa15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 SAV1Q9H4B6 383 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-210ENST00000555995 E5RGE8 158 aa15.08■□□□□ 0
CCDC88C-210ENST00000555995 SSNA1O43805 119 aa15.08■□□□□ 0
CCDC88C-210ENST00000555995 VWC2Q2TAL6 325 aa15.08■□□□□ 0
CCDC88C-210ENST00000555995 Q6ZRG5 221 aa15.08■□□□□ 0
CCDC88C-210ENST00000555995 WDR83OSQ9Y284 106 aa15.08■□□□□ 0
CCDC88C-210ENST00000555995 NUPR2A6NF83 97 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 COX7A2P2O60397 106 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 MPDU1O75352 247 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 C4BPBP20851 252 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 MGST2Q99735 147 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 MFFQ9GZY8 342 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 CSMD3Q7Z407 3707 aa15.07■□□□□ 0
CCDC88C-210ENST00000555995 IGSF23A1L1A6 192 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 CXorf65A6NEN9 183 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 MIFP14174 115 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 BAXQ07812 192 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 UHRF2Q96PU4 802 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 PFDN5Q99471 154 aa15.06■□□□□ 0
CCDC88C-210ENST00000555995 A0A087X0K7 114 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 UBE2L5PA0A1B0GUS4 154 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 SIX6O95475 246 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 PTTG1O95997 202 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 GIG44P09565 113 aaPredicted RBP15.05■□□□□ -0
CCDC88C-210ENST00000555995 CXCL2P19875 107 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 LINC00305Q7Z4B0 112 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 OR1L4Q8NGR5 311 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 CHAC2Q8WUX2 184 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 STARD9Q9P2P6 4700 aa15.05■□□□□ -0
CCDC88C-210ENST00000555995 ZNF705EA8MWA4 302 aaPredicted RBP15.04■□□□□ -0
CCDC88C-210ENST00000555995 JTBO76095 146 aa15.04■□□□□ -0
CCDC88C-210ENST00000555995 LRRC37A5PQ49AS3 106 aa15.04■□□□□ -0
CCDC88C-210ENST00000555995 C10orf113Q5VZT2 155 aa15.04■□□□□ -0
CCDC88C-210ENST00000555995 BPIFA4PQ86YQ2 179 aa15.04■□□□□ -0
CCDC88C-210ENST00000555995 RPL29P47914 159 aaKnown RBP15.03■□□□□ -0
CCDC88C-210ENST00000555995 FGL1Q08830 312 aa15.03■□□□□ -0
CCDC88C-210ENST00000555995 LCN15Q6UWW0 184 aa15.03■□□□□ -0
CCDC88C-210ENST00000555995 PATE2Q6UY27 113 aa15.03■□□□□ -0
CCDC88C-210ENST00000555995 LRRC20Q8TCA0 184 aa15.03■□□□□ -0
CCDC88C-210ENST00000555995 KCNIP2Q9NS61 270 aa15.03■□□□□ -0
CCDC88C-210ENST00000555995 A0A0J9YX75 114 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 LCE6AA0A183 80 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 B2MP61769 119 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PRR20EP86478 221 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PRR20CP86479 221 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PRR20DP86480 221 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PRR20BP86481 221 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PRR20AP86496 221 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 EWSR1Q01844 656 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC88C-210ENST00000555995 PMS2P11Q13670 270 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 OR4B1Q8NGF8 309 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 PPP1R1CQ8WVI7 109 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 DNAJC4Q9NNZ3 241 aa15.02■□□□□ -0
CCDC88C-210ENST00000555995 DUSP14O95147 198 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 FGF7P21781 194 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 H2BFSP57053 126 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 OPCMLQ14982 345 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 GDF5OSQ5U4N7 250 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 Q8NAQ8 132 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 CSNK1G2-AS1Q8NCQ2 148 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 C11orf45Q8TAV5 145 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 SLC50A1Q9BRV3 221 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 XCL2Q9UBD3 114 aa15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 KLK5Q9Y337 293 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-210ENST00000555995 AMBPP02760 352 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 PSG9Q00887 426 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 MIC13Q5XKP0 118 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 OR5C1Q8NGR4 320 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 HRH4Q9H3N8 390 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 SLC39A9Q9NUM3 307 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 CLEC5AQ9NY25 188 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 OR5AC2Q9NZP5 309 aa15□□□□□ -0.01
CCDC88C-210ENST00000555995 FAM78BQ5VT40 261 aa14.99□□□□□ -0.01
CCDC88C-210ENST00000555995 ZNF738Q8NE65 137 aa14.99□□□□□ -0.01
CCDC88C-210ENST00000555995 TMEM37Q8WXS4 190 aa14.99□□□□□ -0.01
CCDC88C-210ENST00000555995 C20orf173Q96LM9 149 aa14.99□□□□□ -0.01
CCDC88C-210ENST00000555995 C17orf77Q96MU5 243 aa14.99□□□□□ -0.01
CCDC88C-210ENST00000555995 IGHV4-28A0A0C4DH34 117 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 A8MTW9 85 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 MPC2O95563 127 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 IGKV3-20P01619 116 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 NHLH2Q02577 135 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 GUK1Q16774 197 aa14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 CEMP1Q6PRD7 247 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-210ENST00000555995 ZNF709Q8N972 641 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms