RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RBMY1FQ15415 496 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 GDF5OSQ5U4N7 250 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF705AQ6ZN79 300 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF709Q8N972 641 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 SCRT1Q9BWW7 348 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 SLC25A22Q9H936 323 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 RPRMQ9NS64 109 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 A0A0J9YX75 114 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 C5orf51A6NDU8 294 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF705FA8MVS1 300 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 L7N2F9 121 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF705DP0CH99 300 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF705BP0CI00 300 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 VAMP2P63027 116 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 VWC2Q2TAL6 325 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 GSG1LQ6UXU4 331 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 C16orf92Q96LL3 132 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 LINC00052Q96N35 136 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 RSG1Q9BU20 258 aa11.6□□□□□ -0.55
CCDC88C-209ENST00000554872 SMIM9A6NGZ8 99 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 FAM25EA8MYX2 175 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 C11orf94C9JXX5 98 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 AGPAT2O15120 278 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 PVALBP20472 110 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 NANOS2P60321 138 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 EBLN2Q6P2I7 272 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 GPN1Q9HCN4 374 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 LYRM2Q9NU23 88 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 CLEC5AQ9NY25 188 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 XCL2Q9UBD3 114 aa11.59□□□□□ -0.55
CCDC88C-209ENST00000554872 PRAF2O60831 178 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 CXCL2P19875 107 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 PSG9Q00887 426 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 SLC38A11Q08AI6 406 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 PATE2Q6UY27 113 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 ENKURQ8TC29 256 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 CHAC2Q8WUX2 184 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 C20orf173Q96LM9 149 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 ARV1Q9H2C2 271 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 BATF3Q9NR55 127 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 DOK5Q9P104 306 aa11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 LSM5Q9Y4Y9 91 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-209ENST00000554872 ELOA3CA0A087WX78 387 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 TRAV8-2A0A0B4J237 113 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 TMEM189A5PLL7 270 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 GOSR2O14653 212 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 MRPS12O15235 138 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 DEFB4AO15263 64 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 OR5G3P0C626 314 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 SULT1A1P50225 295 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 CAV2P51636 162 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 DEFB1P60022 68 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 IFITM3Q01628 133 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 FAM78BQ5VT40 261 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 UHRF2Q96PU4 802 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 MGST2Q99735 147 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 ARL6Q9H0F7 186 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 WDR83OSQ9Y284 106 aa11.57□□□□□ -0.56
CCDC88C-209ENST00000554872 AMBPP02760 352 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 S100A11P31949 105 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 PRR20EP86478 221 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 PRR20CP86479 221 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 PRR20DP86480 221 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 PRR20BP86481 221 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 PRR20AP86496 221 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 RAB31Q13636 194 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 RAB32Q13637 225 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 AMTNQ6UX39 209 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 TMEM252Q8N6L7 170 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 C2CD4CQ8TF44 421 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 UQCC1Q9NVA1 299 aa11.56□□□□□ -0.56
CCDC88C-209ENST00000554872 F6UB75 175 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 DUSP14O95147 198 aaKnown RBP11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 BCAP31P51572 246 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 HBG1P69891 147 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 HBG2P69892 147 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 LGALS9CQ6DKI2 356 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 NRARPQ7Z6K4 114 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 STX12Q86Y82 276 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 OR4B1Q8NGF8 309 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 MARVELD1Q9BSK0 173 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 NMES1Q9C002 83 aa11.55□□□□□ -0.56
CCDC88C-209ENST00000554872 TEX48A0A1B0GUV7 120 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 FAM24AA6NFZ4 105 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 CST7O76096 145 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 CXCL3P19876 107 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 HLA-DMBP28068 263 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 CAMLGP49069 296 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 S100A10P60903 97 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 ATP6V1FQ16864 119 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 LCN15Q6UWW0 184 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 LINC00305Q7Z4B0 112 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 TMEM37Q8WXS4 190 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 SLC35B3Q9H1N7 401 aa11.54□□□□□ -0.56
CCDC88C-209ENST00000554872 TRAV10A0A0B4J240 114 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 IGSF23A1L1A6 192 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 COX7A2P2O60397 106 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 MPDU1O75352 247 aa11.53□□□□□ -0.56
CCDC88C-209ENST00000554872 IGKV3-20P01619 116 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms