RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 C4orf22Q6V702 233 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 NEK7Q8TDX7 302 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 POP5Q969H6 163 aaKnown RBP1.13□□□□□ -2.23
VPS29-205ENST00000548539 TP53RKQ96S44 253 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 PBOV1Q9GZY1 135 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 ARHGEF11O15085 1522 aa1.13□□□□□ -2.23
VPS29-205ENST00000548539 OBSL1O75147 1896 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 TRAV10A0A0B4J240 114 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 E5RI56 91 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 M0R233 179 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 CCL25O15444 150 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 IFNA14P01570 189 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 NEFHP12036 1026 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 CRYBA4P53673 196 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 OR5D16Q8NGK9 328 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 PATE1Q8WXA2 126 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 RAB37Q96AX2 223 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 CHCHD1Q96BP2 118 aaKnown RBP1.12□□□□□ -2.23
VPS29-205ENST00000548539 MALSU1Q96EH3 234 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 LINC00526Q96FQ7 95 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 TMEM70Q9BUB7 260 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 GGACTQ9BVM4 153 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 TNRC6BQ9UPQ9 1833 aaKnown RBP1.12□□□□□ -2.23
VPS29-205ENST00000548539 MED12LQ86YW9 2145 aa1.12□□□□□ -2.23
VPS29-205ENST00000548539 ALPK2Q86TB3 2170 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 TRBV6-4A0A1B0GX49 114 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 KLF7O75840 302 aaPredicted RBP1.11□□□□□ -2.23
VPS29-205ENST00000548539 TCTAP57738 103 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 CDK6Q00534 326 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 TRIQKQ629K1 86 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 C3orf33Q6P1S2 294 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 C2orf82Q6UX34 121 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 STX19Q8N4C7 294 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 UHRF1BP1Q6BDS2 1440 aa1.11□□□□□ -2.23
VPS29-205ENST00000548539 E7EUB6 86 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 C17orf112F2Z3M2 114 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 ERC2-IT1O76042 136 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 IGLV1-51P01701 117 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 OR10J4P0C629 311 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 DSCR4P56555 118 aaPredicted RBP1.1□□□□□ -2.23
VPS29-205ENST00000548539 LTC4SQ16873 150 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 DEFB115Q30KQ5 88 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 Q8TAT8 98 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 DYDC1Q8WWB3 177 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 CACYBPQ9HB71 228 aaKnown RBP1.1□□□□□ -2.23
VPS29-205ENST00000548539 ORMDL1Q9P0S3 153 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 MYH7BA7E2Y1 1941 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 CEP192Q8TEP8 1941 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 SCN8AQ9UQD0 1980 aa1.1□□□□□ -2.23
VPS29-205ENST00000548539 TENM1Q9UKZ4 2725 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 DENND4CQ5VZ89 1909 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 DLG5Q8TDM6 1919 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 EML6Q6ZMW3 1958 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 EXPH5Q8NEV8 1989 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 OR2T8A6NH00 312 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 RER1O15258 196 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 SERPINB1P30740 379 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 S100A5P33763 92 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 FKBP1CQ5VVH2 108 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 C1orf140Q5VVS0 124 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 ZNF833PQ6ZTB9 187 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 GRINAQ7Z429 371 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 FAM24BQ8N5W8 94 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 MUCL1Q96DR8 90 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 LINC00052Q96N35 136 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 BIN3Q9NQY0 253 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 IL20Q9NYY1 176 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 MED11Q9P086 117 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 ASB4Q9Y574 426 aa1.09□□□□□ -2.23
VPS29-205ENST00000548539 IGHV1-58A0A0C4DH39 117 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 IDO1P14902 403 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 RAB5CP51148 216 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 KLRD1Q13241 179 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 GKN2Q86XP6 184 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 ZC2HC1AQ96GY0 325 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 OR52A1Q9UKL2 312 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 RNF11Q9Y3C5 154 aa1.08□□□□□ -2.24
VPS29-205ENST00000548539 TNS3Q68CZ2 1445 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 LAMB4A4D0S4 1761 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 F8W1H4 67 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 IFNA4P05014 189 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 EIF3IQ13347 325 aaKnown RBP1.07□□□□□ -2.24
VPS29-205ENST00000548539 TMEM14EPQ6UXP3 125 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 CROCCP2Q86T23 111 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 NUP35Q8NFH5 326 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 PLEKHB2Q96CS7 222 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 CARD19Q96LW7 228 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 HYLS1Q96M11 299 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 MAP1LC3BQ9GZQ8 125 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 BOLA2Q9H3K6 86 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 TMEM14CQ9P0S9 112 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 ADGRB2O60241 1585 aa1.07□□□□□ -2.24
VPS29-205ENST00000548539 DIDO1Q9BTC0 2240 aaKnown RBP1.07□□□□□ -2.24
VPS29-205ENST00000548539 POLEQ07864 2286 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 CACNA1BQ00975 2339 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 PPP5D1E7EU14 171 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 NUPR1O60356 82 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 HIST1H2BKO60814 126 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 HIST1H2BJP06899 126 aa1.06□□□□□ -2.24
VPS29-205ENST00000548539 CXCL8P10145 99 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms