RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, human

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-209	ENST00000540747	PUS1	Q9Y606	427 aa	Known RBP eCLIP	5.23	□□□□□ -1.57
YBX3-209	ENST00000540747		U3KQE9	123 aa		5.23	□□□□□ -1.57
YBX3-209	ENST00000540747	FAT1	Q14517	4588 aa		5.23	□□□□□ -1.57
YBX3-209	ENST00000540747	PIGBOS1	A0A0B4J2F0	54 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	IGHV3-66	A0A0C4DH42	116 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	KNCN	A6PVL3	124 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747		M0R2N4	97 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	DNASE2	O00115	360 aa	Predicted RBP	5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	GNG7	O60262	68 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	MED6	O75586	246 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	ATG12	O94817	140 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	SNAPIN	O95295	136 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	TMEM50A	O95807	157 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	OR5AC1	P0C628	307 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747		P0C879	139 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	P2RY1	P47900	373 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	SULT1A2	P50226	295 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	VAMP2	P63027	116 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	SMUG1	Q53HV7	270 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747		Q6ZRM9	215 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	LYZL2	Q7Z4W2	148 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	LRTM2	Q8N967	370 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	NDUFAF3	Q9BU61	184 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	CLEC5A	Q9NY25	188 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	MRPL36	Q9P0J6	103 aa	Known RBP	5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	TMED3	Q9Y3Q3	217 aa		5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.22	□□□□□ -1.57
YBX3-209	ENST00000540747	C3orf85	A0A1B0GTC6	90 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ZNF705F	A8MVS1	300 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	GPR31	O00270	319 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	CDK2AP2	O75956	126 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	IGKV1-17	P01599	117 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	MBP	P02686	304 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ZNF688	P0C7X2	276 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ZNF705D	P0CH99	300 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ZNF705B	P0CI00	300 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	NPBWR1	P48145	328 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	HSPE1	P61604	102 aa	Known RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	PEA15	Q15121	130 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ATRAID	Q6UW56	229 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	ZNF705A	Q6ZN79	300 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	SMIM8	Q96KF7	97 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	NEU1	Q99519	415 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	SMIM3	Q9BZL3	60 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	SLC25A31	Q9H0C2	315 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	FNDC4	Q9H6D8	234 aa	Predicted RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	TMEM231	Q9H6L2	316 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	RABAC1	Q9UI14	185 aa		5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	RCL1	Q9Y2P8	373 aa	Known RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	STRAP	Q9Y3F4	350 aa	Known RBP	5.21	□□□□□ -1.58
YBX3-209	ENST00000540747	NACA	E9PAV3	2078 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	DUXB	A0A1W2PPF3	345 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	WRB	O00258	174 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CDS2	O95674	445 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	SEC11B	P0C7V7	166 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	RNASE2	P10153	161 aa	Known RBP	5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	NPPC	P23582	126 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CAMLG	P49069	296 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	RAB5C	P51148	216 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CAV2	P51636	162 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	AKR1C2	P52895	323 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	RND3	P61587	244 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	AKR1C1	Q04828	323 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	BSX	Q3C1V8	233 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	ACTL10	Q5JWF8	245 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	TMEM268	Q5VZI3	342 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CMTM1	Q8IZ96	169 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CLRN3	Q8NCR9	226 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	STXBP6	Q8NFX7	210 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	GLYATL2	Q8WU03	294 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	GLMP	Q8WWB7	406 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	PINX1	Q96BK5	328 aa	Known RBP	5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	FAM210B	Q96KR6	192 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	RAB40C	Q96S21	281 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	SEC11C	Q9BY50	192 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	TMEM222	Q9H0R3	208 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	UQCC1	Q9NVA1	299 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	CARHSP1	Q9Y2V2	147 aa	Known RBP	5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	MYCBP2	O75592	4640 aa		5.2	□□□□□ -1.58
YBX3-209	ENST00000540747	VPS13B	Q7Z7G8	4022 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747		A0A1W2PS18	150 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	FAM74A7	A6NL05	159 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747		H3BMM0	161 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	AGPAT2	O15120	278 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	CLN5	O75503	358 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	IGKV1-5	P01602	117 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	NKX2-1	P43699	371 aa	Predicted RBP	5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	RPL11	P62913	178 aa	Known RBP	5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	IZUMO4	Q1ZYL8	232 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	RNF212	Q495C1	297 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	AARD	Q4LEZ3	155 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	FAM74A3	Q4VXF1	159 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	C10orf91	Q5T1B1	145 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	C16orf54	Q6UWD8	224 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747		Q6ZRG5	221 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	H2BFWT	Q7Z2G1	175 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	TBC1D26	Q86UD7	250 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	FAM219A	Q8IW50	185 aa		5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	SELENOH	Q8IZQ5	122 aa	Known RBP	5.19	□□□□□ -1.58
YBX3-209	ENST00000540747	OR4X1	Q8NH49	305 aa		5.19	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms