RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 MARC2Q969Z3 335 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 NARS2Q96I59 477 aaKnown RBP14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 FAM167A-AS1Q96KT0 104 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 ELOVL1Q9BW60 279 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 UBQLN2Q9UHD9 624 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 PFDN2Q9UHV9 154 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 SELENOKQ9Y6D0 94 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 NOTCH1P46531 2555 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 MEGF8Q7Z7M0 2845 aa14.34□□□□□ -0.11
TNFRSF1A-213ENST00000540022 CTXND1A0A1B0GTU2 59 aa14.33□□□□□ -0.12
TNFRSF1A-213ENST00000540022 C16orf54Q6UWD8 224 aa14.33□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SLC25A2Q9BXI2 301 aa14.33□□□□□ -0.12
TNFRSF1A-213ENST00000540022 TECRQ9NZ01 308 aaKnown RBP14.33□□□□□ -0.12
TNFRSF1A-213ENST00000540022 A0A1W2PS18 150 aa14.32□□□□□ -0.12
TNFRSF1A-213ENST00000540022 ZNF705EA8MWA4 302 aaPredicted RBP14.32□□□□□ -0.12
TNFRSF1A-213ENST00000540022 S100A7P31151 101 aa14.32□□□□□ -0.12
TNFRSF1A-213ENST00000540022 GLMPQ8WWB7 406 aa14.32□□□□□ -0.12
TNFRSF1A-213ENST00000540022 STAG3L2P0CL84 134 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 STAG3L3P0CL85 134 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 C1orf194Q5T5A4 169 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 LCN15Q6UWW0 184 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 OR8I2Q8N0Y5 310 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 ZNF503Q96F45 646 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 MLXQ9UH92 298 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 MRPS12O15235 138 aaKnown RBP14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 H2AFB1P0C5Y9 115 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 TAS2R45P59539 299 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 PCNPQ8WW12 178 aaKnown RBP14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 MBD3L1Q8WWY6 194 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 GRAMD2BQ96HH9 432 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 TMEM231Q9H6L2 316 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SIGLEC8Q9NYZ4 499 aa14.31□□□□□ -0.12
TNFRSF1A-213ENST00000540022 MAP1LC3B2A6NCE7 125 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 PYYP10082 97 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 BMI1P35226 326 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 KHDC3LQ587J8 217 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 ZNF767PQ75MW2 155 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 BPIFA4PQ86YQ2 179 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 WFDC9Q8NEX5 89 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SFT2D1Q8WV19 159 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 MAP1LC3BQ9GZQ8 125 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 RNF24Q9Y225 148 aa14.3□□□□□ -0.12
TNFRSF1A-213ENST00000540022 OR7C2O60412 319 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SAP30O75446 220 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 ARL14EPLP0DKL9 152 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 GP9P14770 177 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 RPL7P18124 248 aaKnown RBP14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 FGF8P55075 233 aaPredicted RBP14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 OR51M1Q9H341 326 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SMAD5-AS1Q9Y6J3 95 aa14.29□□□□□ -0.12
TNFRSF1A-213ENST00000540022 A0A1B0GV50 99 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SNRPCP09234 159 aaKnown RBP14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 CD33P20138 364 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 FAM90A2PQ658T7 463 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SIGLEC15Q6ZMC9 328 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 PQLC2Q6ZP29 291 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 TCF24Q7RTU0 167 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 SAT2Q96F10 170 aaPredicted RBP14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 PAXXQ9BUH6 204 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 TMEM14CQ9P0S9 112 aa14.28□□□□□ -0.12
TNFRSF1A-213ENST00000540022 OR10J4P0C629 311 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 BLOC1S1P78537 153 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 DEFB114Q30KQ6 69 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 STXBP6Q8NFX7 210 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 LRRC20Q8TCA0 184 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 DYNLRB2Q8TF09 96 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 C17orf77Q96MU5 243 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 GPR82Q96P67 336 aa14.27□□□□□ -0.12
TNFRSF1A-213ENST00000540022 NOTCH3Q9UM47 2321 aa14.27□□□□□ -0.13
TNFRSF1A-213ENST00000540022 CXorf1O96002 111 aa14.26□□□□□ -0.13
TNFRSF1A-213ENST00000540022 NMBP08949 121 aa14.26□□□□□ -0.13
TNFRSF1A-213ENST00000540022 FXYD5Q96DB9 178 aa14.26□□□□□ -0.13
TNFRSF1A-213ENST00000540022 TMPRSS5Q9H3S3 457 aa14.26□□□□□ -0.13
TNFRSF1A-213ENST00000540022 H3BQ15 152 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 RGS13O14921 159 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 IGLC2P0DOY2 106 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 GCHFRP30047 84 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 GALR1P47211 349 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 UBE2L3P68036 154 aaKnown RBP14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 IGKV3-7A0A075B6H7 116 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 TRAV1-1A0A0B4J248 108 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 HELTA6NFD8 242 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 H3BTX0 84 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 HIST1H1EP10412 219 aaKnown RBP14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 RPL11P62913 178 aaKnown RBP14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 CCL20P78556 96 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 CD300EQ496F6 205 aaPredicted RBP14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 IQCF2Q8IXL9 164 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 ZNF586Q9NXT0 402 aa14.25□□□□□ -0.13
TNFRSF1A-213ENST00000540022 ZNF785A8K8V0 405 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 WIPF1O43516 503 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 IGLV1-51P01701 117 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 ATF4P18848 351 aaPredicted RBP14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 TMEM61Q8N0U2 210 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 LYPD6BQ8NI32 183 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 HRH4Q9H3N8 390 aa14.24□□□□□ -0.13
TNFRSF1A-213ENST00000540022 PRKDCP78527 4128 aaKnown RBP14.23□□□□□ -0.13
TNFRSF1A-213ENST00000540022 HBE1P02100 147 aa14.23□□□□□ -0.13
TNFRSF1A-213ENST00000540022 NBEAP1P0C6P0 100 aa14.23□□□□□ -0.13
TNFRSF1A-213ENST00000540022 C9orf66Q5T8R8 295 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms