RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 U3KQK5 164 aa11.62□□□□□ -0.55
RPAIN-206ENST00000539417 GIPP09681 153 aaPredicted RBP11.61□□□□□ -0.55
RPAIN-206ENST00000539417 PET100P0DJ07 73 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 NUP62P37198 522 aaPredicted RBP11.61□□□□□ -0.55
RPAIN-206ENST00000539417 RAP2BP61225 183 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 GCSAMLQ5JQS6 135 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 PSMG4Q5JS54 123 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 TCTE3Q8IZS6 198 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 RSG1Q9BU20 258 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 NPCDR1Q9BY65 106 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 AGRNO00468 2067 aa11.61□□□□□ -0.55
RPAIN-206ENST00000539417 TRAV5A0A0B4J249 113 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 MRPS12O15235 138 aaKnown RBP11.6□□□□□ -0.55
RPAIN-206ENST00000539417 SNRPCP09234 159 aaKnown RBP11.6□□□□□ -0.55
RPAIN-206ENST00000539417 RPL29P47914 159 aaKnown RBP11.6□□□□□ -0.55
RPAIN-206ENST00000539417 IGFL4Q6B9Z1 124 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 LINC00305Q7Z4B0 112 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 C20orf173Q96LM9 149 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 WDR61Q9GZS3 305 aaKnown RBP11.6□□□□□ -0.55
RPAIN-206ENST00000539417 SLC39A9Q9NUM3 307 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 FBXL17Q9UF56 701 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 PFDN2Q9UHV9 154 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 PXMP4Q9Y6I8 212 aa11.6□□□□□ -0.55
RPAIN-206ENST00000539417 SMLR1H3BR10 107 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 COX7A2P2O60397 106 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 B2MP61769 119 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 RAB31Q13636 194 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 ATP5SQ99766 215 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 STAB2Q8WWQ8 2551 aa11.59□□□□□ -0.55
RPAIN-206ENST00000539417 PRB4P10163 310 aaPredicted RBP11.58□□□□□ -0.56
RPAIN-206ENST00000539417 CMC4P56277 68 aaPredicted RBP11.58□□□□□ -0.56
RPAIN-206ENST00000539417 GDF5OSQ5U4N7 250 aa11.58□□□□□ -0.56
RPAIN-206ENST00000539417 DNAJC4Q9NNZ3 241 aa11.58□□□□□ -0.56
RPAIN-206ENST00000539417 TRAV8-2A0A0B4J237 113 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 GALR1P47211 349 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 ACTL10Q5JWF8 245 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 PXDC1Q5TGL8 231 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 C10orf113Q5VZT2 155 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 OR2T35Q8NGX2 323 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 LINC00052Q96N35 136 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 SPATA25Q9BR10 227 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 ZMAT4Q9H898 229 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 H3BTX0 84 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 MPDU1O75352 247 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 HLA-DMBP28068 263 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 FGL1Q08830 312 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 SPATA31B1PQ5VZV4 182 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 Q6ZRG5 221 aa11.57□□□□□ -0.56
RPAIN-206ENST00000539417 ELOA3CA0A087WX78 387 aaPredicted RBP11.56□□□□□ -0.56
RPAIN-206ENST00000539417 RNF222A6NCQ9 220 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 F6UB75 175 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 GIG44P09565 113 aaPredicted RBP11.56□□□□□ -0.56
RPAIN-206ENST00000539417 DEFB135Q30KP9 77 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 TRPT1Q86TN4 253 aaKnown RBP11.56□□□□□ -0.56
RPAIN-206ENST00000539417 RNF182Q8N6D2 247 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 AQP10Q96PS8 301 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 OVOL2Q9BRP0 275 aa11.56□□□□□ -0.56
RPAIN-206ENST00000539417 FXYD6-FXYD2A0A087WZ82 144 aa11.55□□□□□ -0.56
RPAIN-206ENST00000539417 C1QBP02746 253 aa11.55□□□□□ -0.56
RPAIN-206ENST00000539417 RPL7P18124 248 aaKnown RBP11.55□□□□□ -0.56
RPAIN-206ENST00000539417 SNRPD3P62318 126 aaKnown RBP11.55□□□□□ -0.56
RPAIN-206ENST00000539417 ASB13Q8WXK3 278 aa11.55□□□□□ -0.56
RPAIN-206ENST00000539417 C16orf92Q96LL3 132 aa11.55□□□□□ -0.56
RPAIN-206ENST00000539417 SEPSECSQ9HD40 501 aaKnown RBP11.55□□□□□ -0.56
RPAIN-206ENST00000539417 H3BQ15 152 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 EIF3GO75821 320 aaKnown RBP eCLIP11.54□□□□□ -0.56
RPAIN-206ENST00000539417 ATF4P18848 351 aaPredicted RBP11.54□□□□□ -0.56
RPAIN-206ENST00000539417 C4BPBP20851 252 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 PSMB3P49720 205 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 NKX2-5P52952 324 aaPredicted RBP11.54□□□□□ -0.56
RPAIN-206ENST00000539417 APOC4P55056 127 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 STHQ8IWL8 128 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 OR1L4Q8NGR5 311 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 GPR82Q96P67 336 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 CSTL1Q9H114 145 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 TNFSF18Q9UNG2 199 aa11.54□□□□□ -0.56
RPAIN-206ENST00000539417 A0A087X0K7 114 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 KIR2DL5BA0A0G2JN68 375 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 KIR2DL5BA0A0G2JPC4 375 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 H3BMM0 161 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 SLC17A3O00476 420 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 ISLRO14498 428 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 MIR17HGQ75NE6 70 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 KIR2DL5AQ8N109 375 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 KIR2DL5BQ8NHK3 375 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 PFDN5Q99471 154 aa11.53□□□□□ -0.56
RPAIN-206ENST00000539417 IFNA5P01569 189 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 IGKV3-20P01619 116 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 IGLC2P0DOY2 106 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 S100A7P31151 101 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 ID1P41134 155 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 GATAD1Q8WUU5 269 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 HYLS1Q96M11 299 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 SAV1Q9H4B6 383 aaPredicted RBP11.52□□□□□ -0.56
RPAIN-206ENST00000539417 EDA2RQ9HAV5 297 aa11.52□□□□□ -0.56
RPAIN-206ENST00000539417 CA1P00915 261 aaPredicted RBP11.51□□□□□ -0.57
RPAIN-206ENST00000539417 ZNF705DP0CH99 300 aaPredicted RBP11.51□□□□□ -0.57
RPAIN-206ENST00000539417 ZNF705BP0CI00 300 aaPredicted RBP11.51□□□□□ -0.57
RPAIN-206ENST00000539417 PYYP10082 97 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms