RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PPP1R14DQ9NXH3 145 aa10.52□□□□□ -0.73
VPS28-215ENST00000531924 PSENENQ9NZ42 101 aa10.52□□□□□ -0.73
VPS28-215ENST00000531924 HERC2O95714 4834 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 SSSCA1O60232 199 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 HYPMO75409 117 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 INSP01308 110 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 OR5G3P0C626 314 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 POLR2GP62487 172 aaKnown RBP eCLIP10.51□□□□□ -0.73
VPS28-215ENST00000531924 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 CYP2G1PQ6ZSU1 146 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 TMEM144Q7Z5S9 345 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 C1orf158Q8N1D5 194 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 ZNF738Q8NE65 137 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 LRRC20Q8TCA0 184 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 PLA2G2EQ9NZK7 142 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 HIGD1AQ9Y241 93 aa10.51□□□□□ -0.73
VPS28-215ENST00000531924 C9orf170A2RU37 121 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 NAP1L6A6NFF2 107 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 PRSS46E5RG02 174 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 ADAP1O75689 374 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 RPL7P18124 248 aaKnown RBP10.5□□□□□ -0.73
VPS28-215ENST00000531924 CNN1P51911 297 aaKnown RBP10.5□□□□□ -0.73
VPS28-215ENST00000531924 OXA1LQ15070 435 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 IGFL4Q6B9Z1 124 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 TMEM182Q6ZP80 229 aaPredicted RBP10.5□□□□□ -0.73
VPS28-215ENST00000531924 CCDC190Q86UF4 302 aa10.5□□□□□ -0.73
VPS28-215ENST00000531924 IGLV2-18A0A075B6J9 118 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 LINC00854A0A1B0GVQ3 168 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 PRSS29PA6NIE9 313 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 CENPXA8MT69 81 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 LINC00869P0C866 280 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 B2MP61769 119 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 RRAS2P62070 204 aaPredicted RBP10.49□□□□□ -0.73
VPS28-215ENST00000531924 SELENOTP62341 195 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 RHOBP62745 196 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 ID3Q02535 119 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 SPINK13Q1W4C9 94 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 C4orf46Q504U0 113 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 SOHLH1Q5JUK2 328 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 RNF182Q8N6D2 247 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 SHANK2-AS3Q9BTD1 123 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 SLC25A39Q9BZJ4 359 aaPredicted RBP10.49□□□□□ -0.73
VPS28-215ENST00000531924 MGAT4CQ9UBM8 478 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 RNF24Q9Y225 148 aa10.49□□□□□ -0.73
VPS28-215ENST00000531924 M0R2Z0 102 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 SCGB1D2O95969 90 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 ANXA7P20073 488 aaKnown RBP10.48□□□□□ -0.73
VPS28-215ENST00000531924 LGALS9BQ3B8N2 356 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 TMEM88Q6PEY1 159 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 OR11H7Q8NGC8 314 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 SMIM8Q96KF7 97 aa10.48□□□□□ -0.73
VPS28-215ENST00000531924 ZNF705GA8MUZ8 300 aaPredicted RBP10.47□□□□□ -0.73
VPS28-215ENST00000531924 H3BRN7 92 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 NDUFB6O95139 128 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 HIST1H1AQ02539 215 aaPredicted RBP10.47□□□□□ -0.73
VPS28-215ENST00000531924 RNF212Q495C1 297 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 AMTNQ6UX39 209 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 OR10P1Q8NGE3 313 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 SRRQ9GZT4 340 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 ARL6Q9H0F7 186 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 NPVFQ9HCQ7 196 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 GSKIPQ9P0R6 139 aa10.47□□□□□ -0.73
VPS28-215ENST00000531924 TRAV8-2A0A0B4J237 113 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 LYRM9A8MSI8 78 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 A8MTW9 85 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 BOLA2-SMG1P6H3BVE0 249 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 OR4E1P0C645 316 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 METTL15P1P0C7V9 234 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 DEFB130BP0DP73 79 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 DEFB130AP0DP74 79 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 DLK1P80370 383 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 IAH1Q2TAA2 248 aaPredicted RBP10.46□□□□□ -0.73
VPS28-215ENST00000531924 UHRF2Q96PU4 802 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 LINC01587Q99440 93 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 ATG101Q9BSB4 218 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 FLVCR2Q9UPI3 526 aa10.46□□□□□ -0.73
VPS28-215ENST00000531924 TRAV12-2A0A075B6T6 113 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 GOSR2O14653 212 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 HTN1P15515 57 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 TEPPQ6URK8 271 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 BAP18Q8IXM2 172 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 C15orf53Q8NAA6 179 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 C17orf77Q96MU5 243 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 KRTAP17-1Q9BYP8 105 aa10.45□□□□□ -0.74
VPS28-215ENST00000531924 RTL8CO15255 209 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 PLP1P60201 277 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 SLC38A11Q08AI6 406 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 ZNF846Q147U1 533 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 PSG3Q16557 428 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 BAK1Q16611 211 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 PXDC1Q5TGL8 231 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 ZNF546Q86UE3 836 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 TMEM256Q8N2U0 113 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 OR8A1Q8NGG7 326 aa10.44□□□□□ -0.74
VPS28-215ENST00000531924 KIAA1109Q2LD37 5005 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 A0A087X0K7 114 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 FNDC10F2Z333 226 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 F5H768 121 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 L7N2F9 121 aa10.43□□□□□ -0.74
VPS28-215ENST00000531924 ZNF701M0R085 212 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms