RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 FXYD7P58549 80 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 SLC38A11Q08AI6 406 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 TEPPQ6URK8 271 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 LINC00299Q6ZSB3 139 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 ZNF546Q86UE3 836 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 S100ZQ8WXG8 99 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 CLUHP3Q96NS8 147 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 SHANK2-AS3Q9BTD1 123 aa9.62□□□□□ -0.87
VPS28-211ENST00000530790 A0A0J9YX75 114 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 FAM240BA0A1B0GVZ2 78 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 K7EPK0 472 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 H2AFB2P0C5Z0 115 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 RPL7P18124 248 aaKnown RBP9.61□□□□□ -0.87
VPS28-211ENST00000530790 TCTAP57738 103 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 PLP1P60201 277 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 PSG9Q00887 426 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 FGL1Q08830 312 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 FAM78BQ5VT40 261 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 MZT2BQ6NZ67 158 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 ZNF705AQ6ZN79 300 aaPredicted RBP9.61□□□□□ -0.87
VPS28-211ENST00000530790 Q6ZTC4 211 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 C12orf45Q8N5I9 185 aaPredicted RBP9.61□□□□□ -0.87
VPS28-211ENST00000530790 ZNF709Q8N972 641 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 C20orf173Q96LM9 149 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 GGACTQ9BVM4 153 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 RNF24Q9Y225 148 aa9.61□□□□□ -0.87
VPS28-211ENST00000530790 LSM5Q9Y4Y9 91 aaKnown RBP9.61□□□□□ -0.87
VPS28-211ENST00000530790 IGHV3OR16-12A0A075B7B8 117 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 TRAV10A0A0B4J240 114 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 ZNF705FA8MVS1 300 aaPredicted RBP9.6□□□□□ -0.87
VPS28-211ENST00000530790 ZNF705DP0CH99 300 aaPredicted RBP9.6□□□□□ -0.87
VPS28-211ENST00000530790 ZNF705BP0CI00 300 aaPredicted RBP9.6□□□□□ -0.87
VPS28-211ENST00000530790 BCAP31P51572 246 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 CAV2P51636 162 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 LGALS9CQ6DKI2 356 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 UHRF2Q96PU4 802 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 NEU1Q99519 415 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 ARL6Q9H0F7 186 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 SLC35B3Q9H1N7 401 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 CELA1Q9UNI1 258 aa9.6□□□□□ -0.87
VPS28-211ENST00000530790 TMEM189A5PLL7 270 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 SMIM9A6NGZ8 99 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 IGLL5B9A064 214 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 GOSR2O14653 212 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 AGPAT2O15120 278 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 PVALBP20472 110 aaPredicted RBP9.59□□□□□ -0.87
VPS28-211ENST00000530790 S100A10P60903 97 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 ARL16Q0P5N6 197 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 ASAH1Q13510 395 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 PXDC1Q5TGL8 231 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 C17orf77Q96MU5 243 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 GOLT1BQ9Y3E0 138 aa9.59□□□□□ -0.87
VPS28-211ENST00000530790 A0A087X0K7 114 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 DEDDO75618 318 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 DUSP14O95147 198 aaKnown RBP9.58□□□□□ -0.88
VPS28-211ENST00000530790 IGFL4Q6B9Z1 124 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 RNF182Q8N6D2 247 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 ZNF738Q8NE65 137 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 ENKURQ8TC29 256 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 C2orf50Q96LR7 162 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 ARV1Q9H2C2 271 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 RFNGQ9Y644 331 aa9.58□□□□□ -0.88
VPS28-211ENST00000530790 EPPK1P58107 5090 aaKnown RBP9.57□□□□□ -0.88
VPS28-211ENST00000530790 TRAV8-2A0A0B4J237 113 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 TEX48A0A1B0GUV7 120 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 COX7A2P2O60397 106 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 CNN1P51911 297 aaKnown RBP9.57□□□□□ -0.88
VPS28-211ENST00000530790 EMP1P54849 157 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 ZNF767PQ75MW2 155 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 LINC00305Q7Z4B0 112 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 LRRC20Q8TCA0 184 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 MGST2Q99735 147 aa9.57□□□□□ -0.88
VPS28-211ENST00000530790 IGHV4-4A0A075B6R2 117 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 DEFB131BA0A096LNP1 70 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 A8MTW9 85 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 CST7O76096 145 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 HBE1P02100 147 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 AMBPP02760 352 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 SPART-AS1P0CW21 52 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 CAMLGP49069 296 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 RAB31Q13636 194 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 C12orf74Q32Q52 190 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 AMTNQ6UX39 209 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 PATE2Q6UY27 113 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 STX12Q86Y82 276 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 RPP25LQ8N5L8 163 aaKnown RBP9.56□□□□□ -0.88
VPS28-211ENST00000530790 IGF2BP2-AS1Q96M15 143 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 TMEM208Q9BTX3 173 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 C11orf1Q9H5F2 150 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 GPN1Q9HCN4 374 aaPredicted RBP9.56□□□□□ -0.88
VPS28-211ENST00000530790 LYRM2Q9NU23 88 aaPredicted RBP9.56□□□□□ -0.88
VPS28-211ENST00000530790 UQCC1Q9NVA1 299 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 PTTG2Q9NZH5 202 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 APLNQ9ULZ1 77 aa9.56□□□□□ -0.88
VPS28-211ENST00000530790 UBE2L5PA0A1B0GUS4 154 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 LOC102723971A0A1B0GUV8 181 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 FAM24AA6NFZ4 105 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 UPK1BO75841 260 aa9.55□□□□□ -0.88
VPS28-211ENST00000530790 INSP01308 110 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms