RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 OR5G3P0C626 314 aa14.98□□□□□ -0.01
VPS28-206ENST00000526734 PHLDA1Q8WV24 401 aaPredicted RBP14.98□□□□□ -0.01
VPS28-206ENST00000526734 SCRT1Q9BWW7 348 aa14.98□□□□□ -0.01
VPS28-206ENST00000526734 DOK5Q9P104 306 aa14.98□□□□□ -0.01
VPS28-206ENST00000526734 IGHV4-28A0A0C4DH34 117 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 SLC38A11Q08AI6 406 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 ARL16Q0P5N6 197 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 IL15RAQ13261 267 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 RAB31Q13636 194 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 C11orf1Q9H5F2 150 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 X6R8D5 127 aa14.97□□□□□ -0.01
VPS28-206ENST00000526734 AGPAT2O15120 278 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 DEFA1P59665 94 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 DEFA3P59666 94 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 S100A10P60903 97 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 ARL6Q9H0F7 186 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 LYRM2Q9NU23 88 aaPredicted RBP14.96□□□□□ -0.01
VPS28-206ENST00000526734 CLEC5AQ9NY25 188 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 XCL2Q9UBD3 114 aa14.96□□□□□ -0.01
VPS28-206ENST00000526734 A0A0J9YX75 114 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 SULT1A1P50225 295 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 HBG1P69891 147 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 HBG2P69892 147 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 STX12Q86Y82 276 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 NEU1Q99519 415 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 ARV1Q9H2C2 271 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 UQCC1Q9NVA1 299 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 AGRNO00468 2067 aa14.95□□□□□ -0.02
VPS28-206ENST00000526734 SACSQ9NZJ4 4579 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 ELOA3CA0A087WX78 387 aaPredicted RBP14.94□□□□□ -0.02
VPS28-206ENST00000526734 A0A087X0K7 114 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 S100A11P31949 105 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 RAB32Q13637 225 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 GDF5OSQ5U4N7 250 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 OR4B1Q8NGF8 309 aa14.94□□□□□ -0.02
VPS28-206ENST00000526734 FAM24AA6NFZ4 105 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 SMIM9A6NGZ8 99 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 A8MTW9 85 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 C11orf94C9JXX5 98 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 DEFB4AO15263 64 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 CST7O76096 145 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 RBMY1A1P0DJD3 496 aaKnown RBP14.93□□□□□ -0.02
VPS28-206ENST00000526734 RBMY1CP0DJD4 496 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 CXCL2P19875 107 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 NANOS2P60321 138 aaKnown RBP14.93□□□□□ -0.02
VPS28-206ENST00000526734 PSG9Q00887 426 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 RBMY1FQ15415 496 aaKnown RBP14.93□□□□□ -0.02
VPS28-206ENST00000526734 VWC2Q2TAL6 325 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 LINC00476Q8WZB0 136 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 C17orf77Q96MU5 243 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 UHRF2Q96PU4 802 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 MGST2Q99735 147 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 WDR83OSQ9Y284 106 aa14.93□□□□□ -0.02
VPS28-206ENST00000526734 INMT-MINDY4F8WBC2 141 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 COX7A2P2O60397 106 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 DUSP14O95147 198 aaKnown RBP14.92□□□□□ -0.02
VPS28-206ENST00000526734 AMBPP02760 352 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 CAMLGP49069 296 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 TCTAP57738 103 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 CYCSP99999 105 aaKnown RBP14.92□□□□□ -0.02
VPS28-206ENST00000526734 IFITM3Q01628 133 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 ATP6V1FQ16864 119 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 FAM78BQ5VT40 261 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 ZNF705AQ6ZN79 300 aaPredicted RBP14.92□□□□□ -0.02
VPS28-206ENST00000526734 NRARPQ7Z6K4 114 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 TMEM252Q8N6L7 170 aa14.92□□□□□ -0.02
VPS28-206ENST00000526734 TMEM189A5PLL7 270 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 ZNF705FA8MVS1 300 aaPredicted RBP14.91□□□□□ -0.02
VPS28-206ENST00000526734 IGKV3-20P01619 116 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 RLN2P04090 185 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 ZNF705DP0CH99 300 aaPredicted RBP14.91□□□□□ -0.02
VPS28-206ENST00000526734 ZNF705BP0CI00 300 aaPredicted RBP14.91□□□□□ -0.02
VPS28-206ENST00000526734 PATE2Q6UY27 113 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 Q6ZRG5 221 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 ZNF709Q8N972 641 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 C20orf173Q96LM9 149 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 MARVELD1Q9BSK0 173 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 NMES1Q9C002 83 aa14.91□□□□□ -0.02
VPS28-206ENST00000526734 DEFB1P60022 68 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 FGL1Q08830 312 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 LINC00305Q7Z4B0 112 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 BPIFA4PQ86YQ2 179 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 CHAC2Q8WUX2 184 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 GOLT1BQ9Y3E0 138 aa14.9□□□□□ -0.02
VPS28-206ENST00000526734 LYSTQ99698 3801 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 TRAV8-2A0A0B4J237 113 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 IGSF23A1L1A6 192 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 F6UB75 175 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 MPDU1O75352 247 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PRR20EP86478 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PRR20CP86479 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PRR20DP86480 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PRR20BP86481 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PRR20AP86496 221 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 C10orf113Q5VZT2 155 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 LCN15Q6UWW0 184 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 OR1L4Q8NGR5 311 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 LRRC20Q8TCA0 184 aa14.89□□□□□ -0.03
VPS28-206ENST00000526734 PFDN5Q99471 154 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms