RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ZNF114Q8NC26 417 aa9.52□□□□□ -0.88
SYNPO-204ENST00000519664 DYNLRB2Q8TF09 96 aa9.52□□□□□ -0.88
SYNPO-204ENST00000519664 H3BUT2 72 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 DIAPH2-AS1Q14236 149 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 OR10J3Q5JRS4 329 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 EEF1AKMT3Q96AZ1 226 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 FNDC4Q9H6D8 234 aaPredicted RBP9.52□□□□□ -0.89
SYNPO-204ENST00000519664 PSG8Q9UQ74 426 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 FAM90A9PA6NNJ1 464 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 K7EM74 188 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 SMIM13P0DJ93 91 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 SRD5A1P18405 259 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 PSMB2P49721 201 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 OR2K2Q8NGT1 345 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 RNF138Q8WVD3 245 aa9.52□□□□□ -0.89
SYNPO-204ENST00000519664 HAX1O00165 279 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 PFN1P07737 140 aaKnown RBP9.51□□□□□ -0.89
SYNPO-204ENST00000519664 CNTFRP26992 372 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 FMC1Q96HJ9 113 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 A0A1W2PS18 150 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 E7EQL1 145 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 EBLN2Q6P2I7 272 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 RPL13AP40429 203 aaKnown RBP9.51□□□□□ -0.89
SYNPO-204ENST00000519664 ID1P41134 155 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 SPRNQ5BIV9 151 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 TMEM167AQ8TBQ9 72 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 ZNF414Q96IQ9 312 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 ST20Q9HBF5 79 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 A0A1W2PNU3 283 aaPredicted RBP9.51□□□□□ -0.89
SYNPO-204ENST00000519664 PLA2G5P39877 138 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 FAM71F2Q6NXP2 309 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 OR1N2Q8NGR9 330 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 NEU4Q8WWR8 484 aaPredicted RBP9.51□□□□□ -0.89
SYNPO-204ENST00000519664 C5orf30Q96GV9 206 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 PIMREGQ9BSJ6 248 aa9.51□□□□□ -0.89
SYNPO-204ENST00000519664 A0A1W2PPI3 338 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 SEC11AP67812 179 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 FER1L6-AS1Q8NA97 138 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 Q8TAT8 98 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 TNFRSF14Q92956 283 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 IGKV2-40A0A087WW87 121 aaPredicted RBP9.5□□□□□ -0.89
SYNPO-204ENST00000519664 IGKV2D-40P01614 121 aaPredicted RBP9.5□□□□□ -0.89
SYNPO-204ENST00000519664 FAM106AQ4KMX7 169 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 LYPD6BQ8NI32 183 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 OTORQ9NRC9 128 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 SIGLEC9Q9Y336 463 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 LOC107984156A0A0G2JMH3 177 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 THBDP07204 575 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 ESDP10768 282 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 ARL17AQ8IVW1 177 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 C8orf46Q8TAG6 207 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 CCL19Q99731 98 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 GNB1LQ9BYB4 327 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 FAM215AQ9Y5M1 114 aa9.5□□□□□ -0.89
SYNPO-204ENST00000519664 KIR2DL5BA0A0G2JN68 375 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 KIR2DL5BA0A0G2JPC4 375 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 PAX2Q02962 417 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 BRD3OSQ6XYD6 125 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 KIR2DL5AQ8N109 375 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 IGFBPL1Q8WX77 278 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 SLC25A39Q9BZJ4 359 aaPredicted RBP9.49□□□□□ -0.89
SYNPO-204ENST00000519664 SRRM4A7MD48 611 aaKnown RBP9.49□□□□□ -0.89
SYNPO-204ENST00000519664 PRSS2P07478 247 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 PLA2G2CQ5R387 149 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 FAM168AQ92567 244 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 TMEM238C9JI98 176 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 TGFAP01135 160 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 CKS1BP61024 79 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 C17orf58Q2M2W7 97 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 TSKUQ8WUA8 353 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 TPSG1Q9NRR2 321 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 CHD3Q12873 2000 aaKnown RBP9.49□□□□□ -0.89
SYNPO-204ENST00000519664 H3BVH4 76 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 EVI2AP22794 236 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 TTC32Q5I0X7 151 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 ORMDL3Q8N138 153 aa9.49□□□□□ -0.89
SYNPO-204ENST00000519664 RNASE8Q8TDE3 154 aaKnown RBP9.49□□□□□ -0.89
SYNPO-204ENST00000519664 C15orf65H3BRN8 121 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 NCR2O95944 276 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 RPS20P60866 119 aaKnown RBP9.48□□□□□ -0.89
SYNPO-204ENST00000519664 C15orf32Q32M92 178 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 MPV17L2Q567V2 206 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 HIST1H4GQ99525 98 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 UNC80Q8N2C7 3258 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 TANC2Q9HCD6 1990 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 TCRAP04437 139 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 ANKRD39Q53RE8 183 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 C11orf53Q8IXP5 236 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 NUP35Q8NFH5 326 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 TRAV40A0A0B4J280 105 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 VDAC2P45880 294 aaPredicted RBP9.48□□□□□ -0.89
SYNPO-204ENST00000519664 FAM159AQ6UWV7 190 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 CENPVQ7Z7K6 275 aaPredicted RBP9.48□□□□□ -0.89
SYNPO-204ENST00000519664 CEACAM8P31997 349 aaPredicted RBP9.48□□□□□ -0.89
SYNPO-204ENST00000519664 HERVK_113P61574 105 aa9.48□□□□□ -0.89
SYNPO-204ENST00000519664 COA6Q5JTJ3 125 aaKnown RBP9.48□□□□□ -0.89
SYNPO-204ENST00000519664 ZNF106Q9H2Y7 1883 aaKnown RBP9.47□□□□□ -0.89
SYNPO-204ENST00000519664 BUB1B-PAK6H3BSN5 160 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 C3orf79P0CE67 100 aa9.47□□□□□ -0.89
SYNPO-204ENST00000519664 NDPQ00604 133 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms