RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 OR11H12B2RN74 326 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 H3BRN7 92 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 BUB3O43684 328 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 CD81P60033 236 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 SERF2P84101 59 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 ARL16Q0P5N6 197 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 GUK1Q16774 197 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 ZFP69Q49AA0 526 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 C16orf54Q6UWD8 224 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 MRAPQ8TCY5 172 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 ST8SIA2Q92186 375 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 HYLS1Q96M11 299 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 ARPC5LQ9BPX5 153 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 PSMG3Q9BT73 122 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 SHANK2-AS3Q9BTD1 123 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 SMIM3Q9BZL3 60 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 SLC25A22Q9H936 323 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 AURKAIP1Q9NWT8 199 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 SMAD5-AS1Q9Y6J3 95 aa5.85□□□□□ -1.47
LIMCH1-222ENST00000515847 hCG_2014768A0A024R1R8 64 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 A0A1W2PPV4 95 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 ZNF98A6NK75 572 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 C1QBP02746 253 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 RHOBP62745 196 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 KHDC3LQ587J8 217 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 LCN15Q6UWW0 184 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 LINC00305Q7Z4B0 112 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 OR2G3Q8NGZ4 309 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 LRRC20Q8TCA0 184 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 GLMPQ8WWB7 406 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 NEURL2Q9BR09 285 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 SLC50A1Q9BRV3 221 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 SLC25A39Q9BZJ4 359 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 TUBA4BQ9H853 241 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 DNAJC4Q9NNZ3 241 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 DOK5Q9P104 306 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 U3KQE9 123 aa5.84□□□□□ -1.47
LIMCH1-222ENST00000515847 IGHV3-49A0A0A0MS15 119 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 IGHV3-66A0A0C4DH42 116 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 RNF222A6NCQ9 220 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 ZNF785A8K8V0 405 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 ISLRO14498 428 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 BCL2L11O43521 198 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 TPT1P13693 172 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 M6PRP20645 277 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 EDN2P20800 178 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 PSMB3P49720 205 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 FFAR4Q5NUL3 377 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 AKR1C8PQ5T2L2 129 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 SPATA31B1PQ5VZV4 182 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 MIC13Q5XKP0 118 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 KCNRGQ8N5I3 272 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 MS4A6AQ9H2W1 248 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 DNAH9Q9NYC9 4486 aa5.83□□□□□ -1.48
LIMCH1-222ENST00000515847 IGKV3-7A0A075B6H7 116 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 IGHV3OR16-13A0A075B7E8 117 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 A0A087X0K7 114 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 IGHV3-74A0A0B4J1X5 117 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 UMAD1C9J7I0 102 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 ZNF253O75346 499 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 GATA2P23769 480 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 TFPI2P48307 235 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 APOC4P55056 127 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 NUTF2P61970 127 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 PDE6HQ13956 83 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 TMEM41BQ5BJD5 291 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 FAM78BQ5VT40 261 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 FAM90A2PQ658T7 463 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 ADAMTSL5Q6ZMM2 481 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 PQLC2Q6ZP29 291 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 HSD17B11Q8NBQ5 300 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 ZNF414Q96IQ9 312 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 C16orf92Q96LL3 132 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 PRR25Q96S07 402 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 SCRT1Q9BWW7 348 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 ZNF471Q9BX82 626 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 AAMDCQ9H7C9 122 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 FUT9Q9Y231 359 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 SORL1Q92673 2214 aa5.82□□□□□ -1.48
LIMCH1-222ENST00000515847 A8MZ25 164 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 TEX46H3BTG2 121 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 K7EIL1 84 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 PSG9Q00887 426 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 FAM74A1Q5RGS3 127 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 EBLN2Q6P2I7 272 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 STHQ8IWL8 128 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 STOML3Q8TAV4 291 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 ST6GAL2Q96JF0 529 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 UHRF2Q96PU4 802 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 RSG1Q9BU20 258 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 ACTR3CQ9C0K3 210 aaPredicted RBP5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 SLC25A32Q9H2D1 315 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 RPRMQ9NS64 109 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 TMEM14CQ9P0S9 112 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 SELENOKQ9Y6D0 94 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 TGP01266 2768 aa5.81□□□□□ -1.48
LIMCH1-222ENST00000515847 LOC102724200A0A096LPH7 203 aaPredicted RBP5.8□□□□□ -1.48
LIMCH1-222ENST00000515847 G3V3Q6 166 aa5.8□□□□□ -1.48
LIMCH1-222ENST00000515847 K7EQG2 157 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms