RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ID1P41134 155 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 Q5BKY6 102 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 C10orf113Q5VZT2 155 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 LINC00305Q7Z4B0 112 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 SBSPONQ8IVN8 264 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 GATAD1Q8WUU5 269 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 SCRT1Q9BWW7 348 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 SLC25A32Q9H2D1 315 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 MAP6D1Q9H9H5 199 aa10.6□□□□□ -0.71
NUP54-216ENST00000514901 LOC102724200A0A096LPH7 203 aaPredicted RBP10.59□□□□□ -0.71
NUP54-216ENST00000514901 DEFB131AP59861 70 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 TMEM37Q8WXS4 190 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 UHRF2Q96PU4 802 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 ASCL2Q99929 193 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 RSG1Q9BU20 258 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 SMIM3Q9BZL3 60 aa10.59□□□□□ -0.71
NUP54-216ENST00000514901 FXYD6-FXYD2A0A087WZ82 144 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 ZNF688P0C7X2 276 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 ZNF266Q14584 549 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 HAGHQ16775 308 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 LEMD1Q68G75 181 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 Q6ZNX1 250 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 APRG1Q8IVJ8 170 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 CITED4Q96RK1 184 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 ZMAT4Q9H898 229 aa10.58□□□□□ -0.72
NUP54-216ENST00000514901 KIR2DL5BA0A0G2JN68 375 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 KIR2DL5BA0A0G2JPC4 375 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 ISLRO14498 428 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 ATF4P18848 351 aaPredicted RBP10.57□□□□□ -0.72
NUP54-216ENST00000514901 PSMB3P49720 205 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 APOC4P55056 127 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 BPIFA4PQ86YQ2 179 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 KIR2DL5AQ8N109 375 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 FAM24BQ8N5W8 94 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 KIR2DL5BQ8NHK3 375 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 WFDC1Q9HC57 220 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 TNFSF18Q9UNG2 199 aa10.57□□□□□ -0.72
NUP54-216ENST00000514901 COL7A1Q02388 2944 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 UBE2CO00762 179 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 PSMG4Q5JS54 123 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 C16orf92Q96LL3 132 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 TM2D3Q9BRN9 247 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 NBEAL2Q6ZNJ1 2754 aa10.56□□□□□ -0.72
NUP54-216ENST00000514901 A0A087X0K7 114 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 G3V3Q6 166 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 SOCS3O14543 225 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 STHQ8IWL8 128 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 SPATA25Q9BR10 227 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 TIMM9Q9Y5J7 89 aa10.55□□□□□ -0.72
NUP54-216ENST00000514901 RNF222A6NCQ9 220 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 TAAR5O14804 337 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 RPL35AP18077 110 aaKnown RBP10.54□□□□□ -0.72
NUP54-216ENST00000514901 CXCL2P19875 107 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 ZNF124Q15973 351 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 SPATA31B1PQ5VZV4 182 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 LINC00052Q96N35 136 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 U3KQK5 164 aa10.54□□□□□ -0.72
NUP54-216ENST00000514901 HUWE1Q7Z6Z7 4374 aaKnown RBP10.54□□□□□ -0.72
NUP54-216ENST00000514901 AGRNO00468 2067 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 BORCS7-ASMTA0A0B4J1R7 106 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 HMSDA8MTL9 139 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 MRPS12O15235 138 aaKnown RBP10.53□□□□□ -0.72
NUP54-216ENST00000514901 GUK1Q16774 197 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 FFAR4Q5NUL3 377 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 FAM78BQ5VT40 261 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 LCN15Q6UWW0 184 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 LRRC20Q8TCA0 184 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 C17orf77Q96MU5 243 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 MRPL32Q9BYC8 188 aaKnown RBP10.53□□□□□ -0.72
NUP54-216ENST00000514901 MFFQ9GZY8 342 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 CSTL1Q9H114 145 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 HRH4Q9H3N8 390 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 RPRMQ9NS64 109 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 TMEM14CQ9P0S9 112 aa10.53□□□□□ -0.72
NUP54-216ENST00000514901 TRAV5A0A0B4J249 113 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 ARPC5O15511 151 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 ACOT6Q3I5F7 207 aaPredicted RBP10.52□□□□□ -0.73
NUP54-216ENST00000514901 GCSAMLQ5JQS6 135 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 ACTL10Q5JWF8 245 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 MORN5Q5VZ52 161 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 FOXI2Q6ZQN5 318 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 Q6ZWC4 215 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 SLC50A1Q9BRV3 221 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 PSMG3Q9BT73 122 aaPredicted RBP10.52□□□□□ -0.73
NUP54-216ENST00000514901 CLEC5AQ9NY25 188 aa10.52□□□□□ -0.73
NUP54-216ENST00000514901 KNCNA6PVL3 124 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 SMLR1H3BR10 107 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 JTBO76095 146 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 IGLC2P0DOY2 106 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 SPP1P10451 314 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 RHOBP62745 196 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 SERF2P84101 59 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 ZNF345Q14585 488 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 TMEM41BQ5BJD5 291 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 EBLN2Q6P2I7 272 aa10.51□□□□□ -0.73
NUP54-216ENST00000514901 MORN3Q6PF18 240 aaPredicted RBP10.51□□□□□ -0.73
NUP54-216ENST00000514901 TRPT1Q86TN4 253 aaKnown RBP10.51□□□□□ -0.73
NUP54-216ENST00000514901 GNPNAT1Q96EK6 184 aaPredicted RBP10.51□□□□□ -0.73
NUP54-216ENST00000514901 RCHY1Q96PM5 261 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms