RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 PSMG3Q9BT73 122 aaPredicted RBP15.19■□□□□ 0.02
USP53-208ENST00000514305 SLC25A39Q9BZJ4 359 aaPredicted RBP15.19■□□□□ 0.02
USP53-208ENST00000514305 SMAD5-AS1Q9Y6J3 95 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 SORL1Q92673 2214 aa15.19■□□□□ 0.02
USP53-208ENST00000514305 LOC100996750A0A140TA64 210 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 ZNF98A6NK75 572 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 BCL2L11O43521 198 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 GALR1P47211 349 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 FFAR4Q5NUL3 377 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 RPL7L1Q6DKI1 246 aaKnown RBP15.18■□□□□ 0.02
USP53-208ENST00000514305 HSD17B11Q8NBQ5 300 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 ASCL2Q99929 193 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 SPAG8Q99932 426 aaPredicted RBP15.18■□□□□ 0.02
USP53-208ENST00000514305 RSG1Q9BU20 258 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 KRTAP4-6Q9BYQ5 205 aa15.18■□□□□ 0.02
USP53-208ENST00000514305 IGHV3OR16-13A0A075B7E8 117 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 IGHV3-74A0A0B4J1X5 117 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 DNASE2O00115 360 aaPredicted RBP15.17■□□□□ 0.02
USP53-208ENST00000514305 TSPAN4O14817 238 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 APOHP02749 345 aaPredicted RBP15.17■□□□□ 0.02
USP53-208ENST00000514305 RPL7P18124 248 aaKnown RBP15.17■□□□□ 0.02
USP53-208ENST00000514305 CXCL2P19875 107 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 CMC4P56277 68 aaPredicted RBP15.17■□□□□ 0.02
USP53-208ENST00000514305 GUCA2BQ16661 112 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 LINC00305Q7Z4B0 112 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 SHANK2-AS3Q9BTD1 123 aa15.17■□□□□ 0.02
USP53-208ENST00000514305 ZNF471Q9BX82 626 aaPredicted RBP15.17■□□□□ 0.02
USP53-208ENST00000514305 KMT2CQ8NEZ4 4911 aaKnown RBP15.16■□□□□ 0.02
USP53-208ENST00000514305 IGHV3-66A0A0C4DH42 116 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 OR4C46A6NHA9 309 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 H3BRN7 92 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 ATP6V0CP27449 155 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 SAMD13Q5VXD3 122 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 EIF5AL1Q6IS14 154 aaKnown RBP15.16■□□□□ 0.02
USP53-208ENST00000514305 SIGLEC15Q6ZMC9 328 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 MRPL32Q9BYC8 188 aaKnown RBP15.16■□□□□ 0.02
USP53-208ENST00000514305 SLC25A22Q9H936 323 aa15.16■□□□□ 0.02
USP53-208ENST00000514305 TRAV2A0A0B4J234 112 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 TPT1P13693 172 aaKnown RBP15.15■□□□□ 0.02
USP53-208ENST00000514305 GP9P14770 177 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 M6PRP20645 277 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 EDN2P20800 178 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 MEOX2P50222 304 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 TNP2Q05952 138 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 LGALSLQ3ZCW2 172 aaPredicted RBP15.15■□□□□ 0.02
USP53-208ENST00000514305 GTSCR1Q86UQ5 136 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 BPIFA4PQ86YQ2 179 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 OR2G3Q8NGZ4 309 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 GLMPQ8WWB7 406 aa15.15■□□□□ 0.02
USP53-208ENST00000514305 A0A1W2PPV4 95 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 RHOBP62745 196 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 FAM78BQ5VT40 261 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 FAM90A2PQ658T7 463 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 PATE2Q6UY27 113 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 TMEM61Q8N0U2 210 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 STXBP6Q8NFX7 210 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 TMEM37Q8WXS4 190 aa15.14■□□□□ 0.01
USP53-208ENST00000514305 ZNF785A8K8V0 405 aa15.13■□□□□ 0.01
USP53-208ENST00000514305 TAS2R45P59539 299 aa15.13■□□□□ 0.01
USP53-208ENST00000514305 CYTL1Q9NRR1 136 aa15.13■□□□□ 0.01
USP53-208ENST00000514305 ATF4P18848 351 aaPredicted RBP15.12■□□□□ 0.01
USP53-208ENST00000514305 SLC51BQ86UW2 128 aa15.12■□□□□ 0.01
USP53-208ENST00000514305 BAP18Q8IXM2 172 aa15.12■□□□□ 0.01
USP53-208ENST00000514305 UHRF2Q96PU4 802 aa15.12■□□□□ 0.01
USP53-208ENST00000514305 NRN1Q9NPD7 142 aa15.12■□□□□ 0.01
USP53-208ENST00000514305 SEC11BP0C7V7 166 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 CD300CQ08708 224 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 AKR1C8PQ5T2L2 129 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 OR10G4Q8NGN3 311 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 OR10G9Q8NGN4 311 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 OR10G7Q8NGN6 311 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 SCRT1Q9BWW7 348 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 SLC25A32Q9H2D1 315 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 FUT9Q9Y231 359 aa15.11■□□□□ 0.01
USP53-208ENST00000514305 IGKV3-7A0A075B6H7 116 aa15.1■□□□□ 0.01
USP53-208ENST00000514305 ID1P41134 155 aa15.1■□□□□ 0.01
USP53-208ENST00000514305 MS4A6AQ9H2W1 248 aa15.1■□□□□ 0.01
USP53-208ENST00000514305 SEPSECSQ9HD40 501 aaKnown RBP15.1■□□□□ 0.01
USP53-208ENST00000514305 IZUMO1RA6ND01 250 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 C3orf84H3BNL1 204 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 SPP1P10451 314 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 C9orf62Q8N4C0 152 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 STOML3Q8TAV4 291 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 LRRC20Q8TCA0 184 aa15.09■□□□□ 0.01
USP53-208ENST00000514305 UMAD1C9J7I0 102 aa15.08■□□□□ 0
USP53-208ENST00000514305 SNRPD3P62318 126 aaKnown RBP15.08■□□□□ 0
USP53-208ENST00000514305 GUK1Q16774 197 aa15.08■□□□□ 0
USP53-208ENST00000514305 KHDC3LQ587J8 217 aa15.08■□□□□ 0
USP53-208ENST00000514305 TMEM41BQ5BJD5 291 aa15.08■□□□□ 0
USP53-208ENST00000514305 LEMD1Q68G75 181 aa15.08■□□□□ 0
USP53-208ENST00000514305 WFDC3Q8IUB2 231 aa15.08■□□□□ 0
USP53-208ENST00000514305 SBSPONQ8IVN8 264 aa15.08■□□□□ 0
USP53-208ENST00000514305 GBGT1Q8N5D6 347 aa15.08■□□□□ 0
USP53-208ENST00000514305 FAM110AQ9BQ89 295 aa15.08■□□□□ 0
USP53-208ENST00000514305 ACTR3CQ9C0K3 210 aaPredicted RBP15.08■□□□□ 0
USP53-208ENST00000514305 FRMD6-AS1P0C7T7 363 aa15.07■□□□□ 0
USP53-208ENST00000514305 TFPI2P48307 235 aa15.07■□□□□ 0
USP53-208ENST00000514305 GCSAMLQ5JQS6 135 aa15.07■□□□□ 0
USP53-208ENST00000514305 RCHY1Q96PM5 261 aa15.07■□□□□ 0
USP53-208ENST00000514305 SH3BGRL3Q9H299 93 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms