RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GP9P14770 177 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 KRTAP10-11P60412 298 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 FFAR4Q5NUL3 377 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 C1orf194Q5T5A4 169 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 C10orf113Q5VZT2 155 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 RPL7L1Q6DKI1 246 aaKnown RBP7.54□□□□□ -1.2
NUP54-203ENST00000504173 C16orf54Q6UWD8 224 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 PATE2Q6UY27 113 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 MUC7Q8TAX7 377 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 GLMPQ8WWB7 406 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 UHRF2Q96PU4 802 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 SHANK2-AS3Q9BTD1 123 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 SCRT1Q9BWW7 348 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 SLC25A39Q9BZJ4 359 aaPredicted RBP7.54□□□□□ -1.2
NUP54-203ENST00000504173 SLC25A22Q9H936 323 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 DNAJC4Q9NNZ3 241 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 PLA2G2EQ9NZK7 142 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 TIMM9Q9Y5J7 89 aa7.54□□□□□ -1.2
NUP54-203ENST00000504173 IGKV3-7A0A075B6H7 116 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 HELTA6NFD8 242 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 TSPAN4O14817 238 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 BCL2L11O43521 198 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 JTBO76095 146 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 NHLRC4P0CG21 123 aaPredicted RBP7.53□□□□□ -1.2
NUP54-203ENST00000504173 ATP6V0CP27449 155 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 GCSAMLQ5JQS6 135 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 FAM90A2PQ658T7 463 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 SIGLEC15Q6ZMC9 328 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 TMUB2Q71RG4 321 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 LINC00305Q7Z4B0 112 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 OR8I2Q8N0Y5 310 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 STXBP6Q8NFX7 210 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 TMEM37Q8WXS4 190 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 GNPNAT1Q96EK6 184 aaPredicted RBP7.53□□□□□ -1.2
NUP54-203ENST00000504173 PRR25Q96S07 402 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 SPAG8Q99932 426 aaPredicted RBP7.53□□□□□ -1.2
NUP54-203ENST00000504173 CYTL1Q9NRR1 136 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 RNF24Q9Y225 148 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 RFNGQ9Y644 331 aa7.53□□□□□ -1.2
NUP54-203ENST00000504173 RBMY1BA6NDE4 496 aaKnown RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 RBMY1EA6NEQ0 496 aaKnown RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 ZNF785A8K8V0 405 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 DNASE2O00115 360 aaPredicted RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 RBMY1DP0C7P1 496 aaKnown RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 GALR1P47211 349 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 TFPI2P48307 235 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 PAFAH1B2P68402 229 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 LGALSLQ3ZCW2 172 aaPredicted RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 LEMD1Q68G75 181 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 GBGT1Q8N5D6 347 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 GATAD1Q8WUU5 269 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 GPR82Q96P67 336 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 PSMG3Q9BT73 122 aaPredicted RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 ZNF471Q9BX82 626 aaPredicted RBP7.52□□□□□ -1.21
NUP54-203ENST00000504173 SLC25A32Q9H2D1 315 aa7.52□□□□□ -1.21
NUP54-203ENST00000504173 SORL1Q92673 2214 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 OR4C46A6NHA9 309 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 RPL7P18124 248 aaKnown RBP7.51□□□□□ -1.21
NUP54-203ENST00000504173 EIF5AP63241 154 aaKnown RBP7.51□□□□□ -1.21
NUP54-203ENST00000504173 ACOT6Q3I5F7 207 aaPredicted RBP7.51□□□□□ -1.21
NUP54-203ENST00000504173 DEFB121Q5J5C9 76 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 FAM78BQ5VT40 261 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 MORN5Q5VZ52 161 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 GTSCR1Q86UQ5 136 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 OR2G3Q8NGZ4 309 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 MRPL32Q9BYC8 188 aaKnown RBP7.51□□□□□ -1.21
NUP54-203ENST00000504173 SH3BGRL3Q9H299 93 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 MS4A6AQ9H2W1 248 aa7.51□□□□□ -1.21
NUP54-203ENST00000504173 TPT1P13693 172 aaKnown RBP7.5□□□□□ -1.21
NUP54-203ENST00000504173 ATF4P18848 351 aaPredicted RBP7.5□□□□□ -1.21
NUP54-203ENST00000504173 M6PRP20645 277 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 C4BPBP20851 252 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 CD81P60033 236 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 RAB2AP61019 212 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 SERF2P84101 59 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 C9orf62Q8N4C0 152 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 NRN1Q9NPD7 142 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 CSMD3Q7Z407 3707 aa7.5□□□□□ -1.21
NUP54-203ENST00000504173 TRAV2A0A0B4J234 112 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 TRAV5A0A0B4J249 113 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 A0A1W2PPV4 95 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 MBP02144 154 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 CD7P09564 240 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 NKX2-5P52952 324 aaPredicted RBP7.49□□□□□ -1.21
NUP54-203ENST00000504173 RHOBP62745 196 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 SPATA31B1PQ5VZV4 182 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 FAM122CQ6P4D5 195 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 MIR17HGQ75NE6 70 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 BPIFA4PQ86YQ2 179 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 OR10G4Q8NGN3 311 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 OR10G9Q8NGN4 311 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 OR10G7Q8NGN6 311 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 SEPSECSQ9HD40 501 aaKnown RBP7.49□□□□□ -1.21
NUP54-203ENST00000504173 FUT9Q9Y231 359 aa7.49□□□□□ -1.21
NUP54-203ENST00000504173 K7EQG2 157 aa7.48□□□□□ -1.21
NUP54-203ENST00000504173 SPP1P10451 314 aa7.48□□□□□ -1.21
NUP54-203ENST00000504173 MEOX2P50222 304 aa7.48□□□□□ -1.21
NUP54-203ENST00000504173 TAS2R45P59539 299 aa7.48□□□□□ -1.21
NUP54-203ENST00000504173 TMEM41BQ5BJD5 291 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms