RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DOPEY1Q5JWR5 2465 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 SCO2A0A1W2PP80 73 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 WI2-2373I1.2A0A1W2PRP0 233 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 TCF21O43680 179 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 PYYP10082 97 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 PRR27Q6MZM9 219 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 EBLN2Q6P2I7 272 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 ZNF738Q8NE65 137 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 TMEM242Q9NWH2 141 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.56□□□□□ -1.36
USP54-215ENST00000497106 LGALS1P09382 135 aaKnown RBP6.56□□□□□ -1.36
USP54-215ENST00000497106 CENPWQ5EE01 88 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 C10orf91Q5T1B1 145 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 FAM162BQ5T6X4 162 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 TOMM20LQ6UXN7 152 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 OR4B1Q8NGF8 309 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 C11orf52Q96A22 123 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 OVOL1O14753 267 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 AMY1AP04745 511 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 CDKN1BP46527 198 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 MRPL27Q9P0M9 148 aaKnown RBP6.56□□□□□ -1.36
USP54-215ENST00000497106 TRAV5A0A0B4J249 113 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 IGKV1-17P01599 117 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 TSPOP30536 169 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 OR5I1Q13606 314 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 LDLRAD2Q5SZI1 272 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 PRNTQ86SH4 94 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 DOCK11Q5JSL3 2073 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 A8MWL6 223 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 SRSF3P84103 164 aaKnown RBP6.55□□□□□ -1.36
USP54-215ENST00000497106 IBA57Q5T440 356 aaKnown RBP6.55□□□□□ -1.36
USP54-215ENST00000497106 NUDT10Q8NFP7 164 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 TMEM37Q8WXS4 190 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 FRZBQ92765 325 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 FAM210BQ96KR6 192 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 IMMP2LQ96T52 175 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 RNF114Q9Y508 228 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 LINC01619G3V211 115 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 IGHG4P01861 327 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 GOLT1AQ6ZVE7 132 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 SFRP2Q96HF1 295 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 UBE2E2Q96LR5 201 aa6.55□□□□□ -1.36
USP54-215ENST00000497106 TRBV9A0A0B4J1U6 114 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 MFAP2P55001 183 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 TM4SF20Q53R12 229 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 C1QL4Q86Z23 238 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 BCL6BQ8N143 479 aaPredicted RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 OSTCQ9NRP0 149 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 YTHDF2Q9Y5A9 579 aaKnown RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 URGCP-MRPS24S4R325 110 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 SPTAN1Q13813 2472 aaKnown RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 ZNF329Q86UD4 541 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 CIARTQ8N365 385 aaPredicted RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 WFDC12Q8WWY7 111 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 MRPL53Q96EL3 112 aaKnown RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 NDUFAF3Q9BU61 184 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 PLA2G2EQ9NZK7 142 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 M0R143 59 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 CTSGP08311 255 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 RPL23P62829 140 aaKnown RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 KLHDC1Q8N7A1 406 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 TRBV19A0A075B6N1 114 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 IGKV1D-37A0A075B6S9 117 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 IGHV3-35A0A0C4DH35 117 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 K7EMT4 169 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 BLCAPP62952 87 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 TMEM183BQ1AE95 376 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 C19orf35Q6ZS72 473 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 PRDM13Q9H4Q3 707 aa6.54□□□□□ -1.36
USP54-215ENST00000497106 SOX21Q9Y651 276 aaPredicted RBP6.54□□□□□ -1.36
USP54-215ENST00000497106 DUSP14O95147 198 aaKnown RBP6.53□□□□□ -1.36
USP54-215ENST00000497106 PF4P02776 101 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 MT-ND6P03923 174 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 TCRAP04437 139 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 SSBP2P81877 361 aaPredicted RBP6.53□□□□□ -1.36
USP54-215ENST00000497106 FAM90A2PQ658T7 463 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 FXYD5Q96DB9 178 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 EYSQ5T1H1 3165 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 IGKV1OR2-108A0A075B7D4 117 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 RPLP1P05386 114 aaKnown RBP6.53□□□□□ -1.36
USP54-215ENST00000497106 FAM3BP58499 235 aaPredicted RBP6.53□□□□□ -1.36
USP54-215ENST00000497106 RIGQ13278 110 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 ASPHD1Q5U4P2 390 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 Q6AWC8 147 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 ZNF343Q6P1L6 599 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 HAX1O00165 279 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 CHEK1O14757 476 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 PRO1933Q9H354 126 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 DNAJC9-AS1A6NH13 148 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 COLCA2A8K830 154 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 CDX1P47902 265 aaPredicted RBP6.53□□□□□ -1.36
USP54-215ENST00000497106 LEMD1Q68G75 181 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 SSX7Q7RTT5 188 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 TMEM75Q8N9X5 138 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 TMEM208Q9BTX3 173 aa6.53□□□□□ -1.36
USP54-215ENST00000497106 OR4C46A6NHA9 309 aa6.52□□□□□ -1.37
USP54-215ENST00000497106 IL17RELQ6ZVW7 336 aa6.52□□□□□ -1.37
USP54-215ENST00000497106 IGHV7-4-1A0A0J9YVY3 117 aa6.52□□□□□ -1.37
USP54-215ENST00000497106 TMEM189A5PLL7 270 aa6.52□□□□□ -1.37
USP54-215ENST00000497106 ZNF207O43670 478 aaKnown RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms