RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 RBFOX3A6NFN3 312 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 SH2D7A6NKC9 451 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-229ENST00000490866 I3L521 148 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 K7EQM0 130 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 MYCNOSP40205 109 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 PROK1P58294 105 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 LYZP61626 148 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 PAFAH1B2P68402 229 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 KIAA0141Q14154 515 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-229ENST00000490866 TOMM20LQ6UXN7 152 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 OR8I2Q8N0Y5 310 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 OR1N2Q8NGR9 330 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 CCDC140Q96MF4 163 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 DUX5Q96PT3 197 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 SLC25A39Q9BZJ4 359 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-229ENST00000490866 EIF5A2Q9GZV4 153 aaKnown RBP5.37□□□□□ -1.55
SYNE1-229ENST00000490866 KLK15Q9H2R5 256 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 AAMDCQ9H7C9 122 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 SIGLEC8Q9NYZ4 499 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 PRELID1Q9Y255 219 aa5.37□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF320A2RRD8 509 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF98A6NK75 572 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 A8MWP6 167 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 TMEM250H0YL14 139 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 BUB3O43684 328 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 OR7C2O60412 319 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 NBEAP1P0C6P0 100 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 INSL3P51460 131 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 KLF5Q13887 457 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-229ENST00000490866 FAM122CQ6P4D5 195 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 C16orf54Q6UWD8 224 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 HIST1H2BAQ96A08 127 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 FAM210AQ96ND0 272 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 PAXXQ9BUH6 204 aa5.36□□□□□ -1.55
SYNE1-229ENST00000490866 IGHV3-21A0A0B4J1V1 117 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 TRAV2A0A0B4J234 112 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 TRAV25A0A0B4J276 109 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 IGHV3-48P01763 117 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 ATF4P18848 351 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-229ENST00000490866 GCHFRP30047 84 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 ID1P41134 155 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 CSN1S1P47710 185 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 MEF2BQ02080 365 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-229ENST00000490866 LCN15Q6UWW0 184 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 PATE2Q6UY27 113 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 Q71RC1 249 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-229ENST00000490866 OR11H1Q8NG94 326 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 OR2K2Q8NGT1 345 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 SMIM12Q96EX1 92 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 SLC50A1Q9BRV3 221 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 CHRDL1Q9BU40 450 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 MCRIP2Q9BUT9 160 aaKnown RBP5.35□□□□□ -1.55
SYNE1-229ENST00000490866 C20orf24Q9BUV8 137 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 GPR61Q9BZJ8 451 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 SLC35B3Q9H1N7 401 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 BIN3Q9NQY0 253 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 MRPL36Q9P0J6 103 aaKnown RBP5.35□□□□□ -1.55
SYNE1-229ENST00000490866 MAST4O15021 2626 aa5.35□□□□□ -1.55
SYNE1-229ENST00000490866 A0A087X0K7 114 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 IGHV7-4-1A0A0J9YVY3 117 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF785A8K8V0 405 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 H3BRN7 92 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 CCL24O00175 119 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 IGHV3-11P01762 117 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 ARL14EPLP0DKL9 152 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 BCL2P10415 239 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 GATA2P23769 480 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-229ENST00000490866 KHDC1LQ5JSQ8 128 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 ZNF506Q5JVG8 444 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 LCNL1Q6ZST4 164 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 KLHL30-AS1Q8NEE0 82 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 CMTM2Q8TAZ6 248 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 MRPL53Q96EL3 112 aaKnown RBP5.34□□□□□ -1.55
SYNE1-229ENST00000490866 VSIRQ9H7M9 311 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 OTORQ9NRC9 128 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 GNG13Q9P2W3 67 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 MLXQ9UH92 298 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 SMPXQ9UHP9 88 aa5.34□□□□□ -1.55
SYNE1-229ENST00000490866 B4DEV8 164 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 PPP5D1E7EU14 171 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 IGHV3-23P01764 117 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 CBLN1P23435 193 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 HOXD3P31249 432 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SNRPD3P62318 126 aaKnown RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 UBE2L3P68036 154 aaKnown RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 PNRC1Q12796 327 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 FHL3Q13643 280 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 USF2Q15853 346 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-229ENST00000490866 ZNF726P1Q15940 193 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 KRTAP19-4Q3LI73 84 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SOHLH1Q5JUK2 328 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SPATA31B1PQ5VZV4 182 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 CST9LP1Q5W188 147 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 SIGLEC15Q6ZMC9 328 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 MIR17HGQ75NE6 70 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 COMMD7Q86VX2 200 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 IQCF2Q8IXL9 164 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 OR9G4Q8NGQ1 327 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 FAM167A-AS1Q96KT0 104 aa5.33□□□□□ -1.56
SYNE1-229ENST00000490866 ZNF747Q9BV97 191 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms