RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TNRC6AQ8NDV7 1962 aaKnown RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 NUP210Q8TEM1 1887 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-208ENST00000490788 KIAA1109Q2LD37 5005 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SVEP1Q4LDE5 3571 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 MYH6P13533 1939 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 A0A0J9YW62 118 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 LCE6AA0A183 80 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TSPAN11A1L157 253 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 GRIFINA4D1Z8 144 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 DPRXA6NFQ7 191 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM212A6NML5 194 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CD300LBA8K4G0 201 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 H3BRM9 83 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TAPBPO15533 448 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CHST1O43916 411 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TBL1XO60907 577 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HSBP1O75506 76 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 KLF7O75840 302 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ATP5LO75964 103 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 IGLV1-47P01700 117 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HLA-AP01891 365 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CATP04040 527 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 P04436 131 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HSPB1P04792 205 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PFN1P07737 140 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CD55P08174 381 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 LIMS3P0CW19 117 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 LIMS4P0CW20 117 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 C8orf88P0DMB2 117 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PTHLHP12272 177 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 IFITM1P13164 125 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CCL4P13236 92 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HIST1H1DP16402 221 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HIST1H1CP16403 213 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ORM2P19652 201 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 VDAC1P21796 283 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 EVI2AP22794 236 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PPIBP23284 216 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 HTR1DP28221 377 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 BLVRBP30043 206 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SRIP30626 198 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PPP1CCP36873 323 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 GALR1P47211 349 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 DLX6P56179 175 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SNRPGP62308 76 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 RPS24P62847 133 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 CCL20P78556 96 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A11Q02978 314 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SRYQ05066 204 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SLC38A11Q08AI6 406 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 KLRD1Q13241 179 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 DIAPH2-AS1Q14236 149 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 EDDM3AQ14507 147 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 WFDC2Q14508 124 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 IHHQ14623 411 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 RBMY1FQ15415 496 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TAL2Q16559 108 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ACSF3Q4G176 576 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TTC32Q5I0X7 151 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 C1orf195Q5TG92 126 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 NCBP2-AS2Q69YL0 99 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 STUMQ69YW2 141 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 Q6AWC8 147 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 LCN12Q6JVE5 192 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SFXN4Q6P4A7 337 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OPN5Q6U736 354 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 COMMD6Q7Z4G1 85 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ACOT1Q86TX2 421 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 BAGE3Q86Y29 109 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 BAGE2Q86Y30 109 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 MSRB3Q8IXL7 192 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 EXOC3-AS1Q8N2X6 119 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 C10orf111Q8N326 155 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR2L13Q8N349 312 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM86BQ8N661 226 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SIGLECL1Q8N7X8 197 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR5AU1Q8NGC0 362 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR10P1Q8NGE3 313 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR5D14Q8NGL3 314 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR2T10Q8NGZ9 312 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 OR5AK2Q8NH90 309 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 JOSD2Q8TAC2 188 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 FAM213BQ8TBF2 198 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 MBD3L1Q8WWY6 194 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 RDH5Q92781 318 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 DLX4Q92988 240 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 POP5Q969H6 163 aaKnown RBP1.49□□□□□ -2.17
HMGB1-208ENST00000490788 C10orf35Q96D05 121 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 PELI1Q96FA3 418 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF799Q96GE5 643 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 LINC01587Q99440 93 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 GPR21Q99679 349 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 ATP5SQ99766 215 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SPIN2AQ99865 258 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SPIN2BQ9BPZ2 258 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 TBL1YQ9BQ87 522 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 C20orf78Q9BR46 151 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 RNF126Q9BV68 326 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SAMD10Q9BYL1 202 aa1.49□□□□□ -2.17
HMGB1-208ENST00000490788 SLC17A9Q9BYT1 436 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms