RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 NPPCP23582 126 aa16.61■□□□□ 0.25
SMC4-221ENST00000489573 ATP5G3P48201 142 aa16.61■□□□□ 0.25
SMC4-221ENST00000489573 CD81P60033 236 aa16.61■□□□□ 0.25
SMC4-221ENST00000489573 UNQ9165/PRO28630Q6UXU0 137 aa16.61■□□□□ 0.25
SMC4-221ENST00000489573 ZNF207O43670 478 aaKnown RBP16.6■□□□□ 0.25
SMC4-221ENST00000489573 NDUFS6O75380 124 aaKnown RBP16.6■□□□□ 0.25
SMC4-221ENST00000489573 ADCYAP1P18509 176 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 CRYBB3P26998 211 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 SRSF2Q01130 221 aaKnown RBP16.6■□□□□ 0.25
SMC4-221ENST00000489573 RPEL1Q2QD12 228 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 GPHB5Q86YW7 130 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 C4orf3Q8WVX3 66 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 OR4F4Q96R69 305 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 RNF114Q9Y508 228 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 IGHV4OR15-8A0A075B7B6 117 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 A0A087WW49 117 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 A0A1W2PRE2 83 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 F8W036 122 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 HIST1H1EP10412 219 aaKnown RBP16.6■□□□□ 0.25
SMC4-221ENST00000489573 FAM106AQ4KMX7 169 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 OR4F17Q8NGA8 305 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 WFDC12Q8WWY7 111 aa16.6■□□□□ 0.25
SMC4-221ENST00000489573 NSD1Q96L73 2696 aaPredicted RBP16.59■□□□□ 0.25
SMC4-221ENST00000489573 MRPS12O15235 138 aaKnown RBP16.59■□□□□ 0.25
SMC4-221ENST00000489573 BUB3O43684 328 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 NBEAP1P0C6P0 100 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 RPL7P18124 248 aaKnown RBP16.59■□□□□ 0.25
SMC4-221ENST00000489573 C18orf65Q6ZTR6 163 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 CYB561D1Q8N8Q1 229 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 SEC11CQ9BY50 192 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 U3KQE9 123 aa16.59■□□□□ 0.25
SMC4-221ENST00000489573 ZNF320A2RRD8 509 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 HAX1O00165 279 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 IGLC2P0DOY2 106 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 CD28P10747 220 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 OR8I2Q8N0Y5 310 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 BLNKQ8WV28 456 aa16.58■□□□□ 0.24
SMC4-221ENST00000489573 TMEM250H0YL14 139 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 PDE6DO43924 150 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 SNRPCP09234 159 aaKnown RBP16.57■□□□□ 0.24
SMC4-221ENST00000489573 CEBPGP53567 150 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 PROK1P58294 105 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 C1orf194Q5T5A4 169 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 KLHL30-AS1Q8NEE0 82 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 ZNF586Q9NXT0 402 aa16.57■□□□□ 0.24
SMC4-221ENST00000489573 F6UZH7 168 aa16.56■□□□□ 0.24
SMC4-221ENST00000489573 H3BQ15 152 aa16.56■□□□□ 0.24
SMC4-221ENST00000489573 APOHP02749 345 aaPredicted RBP16.56■□□□□ 0.24
SMC4-221ENST00000489573 SOHLH1Q5JUK2 328 aa16.56■□□□□ 0.24
SMC4-221ENST00000489573 C10orf91Q5T1B1 145 aa16.56■□□□□ 0.24
SMC4-221ENST00000489573 GPR82Q96P67 336 aa16.56■□□□□ 0.24
SMC4-221ENST00000489573 NKX6-2Q9C056 277 aaPredicted RBP16.56■□□□□ 0.24
SMC4-221ENST00000489573 IGHV3-49A0A0A0MS15 119 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 GGTLC3B5MD39 225 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 K7EMT4 169 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 HOXD3P31249 432 aaPredicted RBP16.55■□□□□ 0.24
SMC4-221ENST00000489573 C11orf44Q8N8P7 122 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 DAZ1Q9NQZ3 744 aaKnown RBP16.55■□□□□ 0.24
SMC4-221ENST00000489573 CARHSP1Q9Y2V2 147 aaKnown RBP16.55■□□□□ 0.24
SMC4-221ENST00000489573 UFC1Q9Y3C8 167 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 IGHV3OR16-13A0A075B7E8 117 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 IGHV3-74A0A0B4J1X5 117 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 IGHV3-66A0A0C4DH42 116 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 H3BTX0 84 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 DEFB136Q30KP8 78 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 FAM90A2PQ658T7 463 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 REC114Q7Z4M0 266 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 CCDC28AQ8IWP9 274 aa16.55■□□□□ 0.24
SMC4-221ENST00000489573 TRBV19A0A075B6N1 114 aa16.54■□□□□ 0.24
SMC4-221ENST00000489573 LINC01619G3V211 115 aa16.54■□□□□ 0.24
SMC4-221ENST00000489573 APOC3P02656 99 aa16.54■□□□□ 0.24
SMC4-221ENST00000489573 RANP62826 216 aaKnown RBP16.54■□□□□ 0.24
SMC4-221ENST00000489573 SUMO1P63165 101 aaKnown RBP16.54■□□□□ 0.24
SMC4-221ENST00000489573 TSSC4Q9Y5U2 329 aaPredicted RBP16.54■□□□□ 0.24
SMC4-221ENST00000489573 ATF4P18848 351 aaPredicted RBP16.53■□□□□ 0.24
SMC4-221ENST00000489573 TM4SF20Q53R12 229 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 HIST2H2BDQ6DRA6 164 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 C16orf54Q6UWD8 224 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 C1QL4Q86Z23 238 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 DPF1Q92782 380 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 GRAMD2BQ96HH9 432 aa16.53■□□□□ 0.24
SMC4-221ENST00000489573 CITED2Q99967 270 aaPredicted RBP16.53■□□□□ 0.24
SMC4-221ENST00000489573 CUBNO60494 3623 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 IGHV7-4-1A0A0J9YVY3 117 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 A0A1B0GUS0 222 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 SCO2A0A1W2PP80 73 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 A0A1W2PS18 150 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 LGALS9O00182 355 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 GALR1P47211 349 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 PDE6HQ13956 83 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 OR11H1Q8NG94 326 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 OR1N2Q8NGR9 330 aa16.52■□□□□ 0.24
SMC4-221ENST00000489573 A8MWP6 167 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 NDUFB4O95168 129 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 MYCNOSP40205 109 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 SYNJ2BPP57105 145 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 C8orf86Q6ZUL3 223 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 GLMPQ8WWB7 406 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 C11orf52Q96A22 123 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 C17orf77Q96MU5 243 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms