RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LRRC37A5PQ49AS3 106 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 MORN3Q6PF18 240 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-226ENST00000488376 RNF182Q8N6D2 247 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 GGACTQ9BVM4 153 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 SAV1Q9H4B6 383 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-226ENST00000488376 XCL2Q9UBD3 114 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 X6R8D5 127 aa10.1□□□□□ -0.79
SYNE1-226ENST00000488376 LCE6AA0A183 80 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 ISLRO14498 428 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 PRAF2O60831 178 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 SNRPCP09234 159 aaKnown RBP10.09□□□□□ -0.79
SYNE1-226ENST00000488376 HLA-DMBP28068 263 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 SULT1A1P50225 295 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 DEFA1P59665 94 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 DEFA3P59666 94 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 RAP2BP61225 183 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 VWC2Q2TAL6 325 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 MIC13Q5XKP0 118 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 ZNF546Q86UE3 836 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 Q8NAQ8 132 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 TMEM37Q8WXS4 190 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 C16orf92Q96LL3 132 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 ARV1Q9H2C2 271 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 WDR83OSQ9Y284 106 aa10.09□□□□□ -0.79
SYNE1-226ENST00000488376 IGHV4-28A0A0C4DH34 117 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 UBE2L5PA0A1B0GUS4 154 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 CXorf65A6NEN9 183 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 MRPS12O15235 138 aaKnown RBP10.08□□□□□ -0.8
SYNE1-226ENST00000488376 RBMY1A1P0DJD3 496 aaKnown RBP10.08□□□□□ -0.8
SYNE1-226ENST00000488376 RBMY1CP0DJD4 496 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 PVALBP20472 110 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-226ENST00000488376 ID1P41134 155 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 NANOS2P60321 138 aaKnown RBP10.08□□□□□ -0.8
SYNE1-226ENST00000488376 NHLH2Q02577 135 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 FGL1Q08830 312 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 RBMY1FQ15415 496 aaKnown RBP10.08□□□□□ -0.8
SYNE1-226ENST00000488376 FOXI2Q6ZQN5 318 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 ZNF709Q8N972 641 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 SLC35B3Q9H1N7 401 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 UQCC1Q9NVA1 299 aa10.08□□□□□ -0.8
SYNE1-226ENST00000488376 DYNC2H1Q8NCM8 4307 aaKnown RBP10.07□□□□□ -0.8
SYNE1-226ENST00000488376 A0A0J9YX75 114 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 ZNF705DP0CH99 300 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-226ENST00000488376 ZNF705BP0CI00 300 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-226ENST00000488376 CAMLGP49069 296 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 PRR20EP86478 221 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 PRR20CP86479 221 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 PRR20DP86480 221 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 PRR20BP86481 221 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 PRR20AP86496 221 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 FAM78BQ5VT40 261 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 LINC00305Q7Z4B0 112 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 OR4B1Q8NGF8 309 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 NMES1Q9C002 83 aa10.07□□□□□ -0.8
SYNE1-226ENST00000488376 C11orf68Q9H3H3 251 aaKnown RBP10.07□□□□□ -0.8
SYNE1-226ENST00000488376 TRAV5A0A0B4J249 113 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 ZNF705EA8MWA4 302 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-226ENST00000488376 H3BTX0 84 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 SSNA1O43805 119 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 COX7A2P2O60397 106 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 ATF4P18848 351 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-226ENST00000488376 S100A11P31949 105 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 MEOX2P50222 304 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 BAXQ07812 192 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 OPCMLQ14982 345 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 STX12Q86Y82 276 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 GPR82Q96P67 336 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 RNF126Q9BV68 326 aa10.06□□□□□ -0.8
SYNE1-226ENST00000488376 ELOA3CA0A087WX78 387 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-226ENST00000488376 RPL7P18124 248 aaKnown RBP10.05□□□□□ -0.8
SYNE1-226ENST00000488376 FGF7P21781 194 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 AMTNQ6UX39 209 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 THAP6Q8TBB0 222 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 PPP1R1CQ8WVI7 109 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 RPRMQ9NS64 109 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 ALG5Q9Y673 324 aa10.05□□□□□ -0.8
SYNE1-226ENST00000488376 A0A087X0K7 114 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 SLC17A3O00476 420 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 CXCL3P19876 107 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 CLINT1Q14677 625 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 TMEM41BQ5BJD5 291 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 GCSAMLQ5JQS6 135 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 PXDC1Q5TGL8 231 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 C10orf113Q5VZT2 155 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 CEMP1Q6PRD7 247 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-226ENST00000488376 OR5C1Q8NGR4 320 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 SLC39A9Q9NUM3 307 aa10.04□□□□□ -0.8
SYNE1-226ENST00000488376 A8MTW9 85 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 E5RGE8 158 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 H3BQ15 152 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 CNN1P51911 297 aaKnown RBP10.03□□□□□ -0.8
SYNE1-226ENST00000488376 B2MP61769 119 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 NUTF2P61970 127 aaKnown RBP10.03□□□□□ -0.8
SYNE1-226ENST00000488376 HBG1P69891 147 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 HBG2P69892 147 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 EBLN2Q6P2I7 272 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 ZNF738Q8NE65 137 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 C11orf45Q8TAV5 145 aa10.03□□□□□ -0.8
SYNE1-226ENST00000488376 PHLDA1Q8WV24 401 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-226ENST00000488376 CLUHP3Q96NS8 147 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms