RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 DNAH10Q8IVF4 4471 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 OR10P1Q8NGE3 313 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 SEC22CQ9BRL7 303 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 SHANK2-AS3Q9BTD1 123 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 RPRMQ9NS64 109 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 APLNQ9ULZ1 77 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 HIGD1AQ9Y241 93 aa10.71□□□□□ -0.69
LIMS3-204ENST00000482065 TRAV8-2A0A0B4J237 113 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 TRAV10A0A0B4J240 114 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 C7orf66A4D0T2 115 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF705FA8MVS1 300 aaPredicted RBP10.7□□□□□ -0.7
LIMS3-204ENST00000482065 HYPMO75409 117 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 OR5G3P0C626 314 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF705DP0CH99 300 aaPredicted RBP10.7□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF705BP0CI00 300 aaPredicted RBP10.7□□□□□ -0.7
LIMS3-204ENST00000482065 TAS2R30P59541 319 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 RAP2BP61225 183 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PRR20EP86478 221 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PRR20CP86479 221 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PRR20DP86480 221 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PRR20BP86481 221 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PRR20AP86496 221 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 PSG9Q00887 426 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 FGL1Q08830 312 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 SLC38A11Q08AI6 406 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 SPATA31B1PQ5VZV4 182 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 CLUHP3Q96NS8 147 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 UHRF2Q96PU4 802 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 NPVFQ9HCQ7 196 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 NUDT15Q9NV35 164 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 MGAT4CQ9UBM8 478 aa10.7□□□□□ -0.7
LIMS3-204ENST00000482065 DNAH6Q9C0G6 4158 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 FAM25EA8MYX2 175 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 S100A7P31151 101 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 EMP1P54849 157 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 PLP1P60201 277 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 RNF182Q8N6D2 247 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 GPR82Q96P67 336 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 NEU1Q99519 415 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 ARL6Q9H0F7 186 aa10.69□□□□□ -0.7
LIMS3-204ENST00000482065 LSM5Q9Y4Y9 91 aaKnown RBP10.69□□□□□ -0.7
LIMS3-204ENST00000482065 IGHV4-4A0A075B6R2 117 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 FNDC10F2Z333 226 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 TCTAP57738 103 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 SELENOTP62341 195 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF846Q147U1 533 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 TEPPQ6URK8 271 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 PATE2Q6UY27 113 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 C1orf158Q8N1D5 194 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF431Q8TF32 576 aaPredicted RBP10.68□□□□□ -0.7
LIMS3-204ENST00000482065 CCDC32Q9BV29 185 aa10.68□□□□□ -0.7
LIMS3-204ENST00000482065 DEFB131BA0A096LNP1 70 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 C5orf51A6NDU8 294 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 A8MTW9 85 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 K7EPK0 472 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 L7N2F9 121 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 H2AFB2P0C5Z0 115 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 RPL7P18124 248 aaKnown RBP10.67□□□□□ -0.7
LIMS3-204ENST00000482065 VAMP2P63027 116 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 AMTNQ6UX39 209 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 GOLT1BQ9Y3E0 138 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 RFNGQ9Y644 331 aa10.67□□□□□ -0.7
LIMS3-204ENST00000482065 SMIM9A6NGZ8 99 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 AGPAT2O15120 278 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 PRB4P10163 310 aaPredicted RBP10.66□□□□□ -0.7
LIMS3-204ENST00000482065 BCAP31P51572 246 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 CNN1P51911 297 aaKnown RBP10.66□□□□□ -0.7
LIMS3-204ENST00000482065 C12orf45Q8N5I9 185 aaPredicted RBP10.66□□□□□ -0.7
LIMS3-204ENST00000482065 MGST2Q99735 147 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 ARV1Q9H2C2 271 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 C11orf1Q9H5F2 150 aa10.66□□□□□ -0.7
LIMS3-204ENST00000482065 A0A087X0K7 114 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 FAM240BA0A1B0GVZ2 78 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 TMEM189A5PLL7 270 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 FAM24AA6NFZ4 105 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 GOSR2O14653 212 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 SPART-AS1P0CW21 52 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 CAV2P51636 162 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 SPINK13Q1W4C9 94 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF546Q86UE3 836 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 ZNF738Q8NE65 137 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 OR11H7Q8NGC8 314 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 RNF126Q9BV68 326 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 GGACTQ9BVM4 153 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 PLA2G2EQ9NZK7 142 aa10.65□□□□□ -0.7
LIMS3-204ENST00000482065 LOC102723971A0A1B0GUV8 181 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 M0R2Z0 102 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 MRPS12O15235 138 aaKnown RBP10.64□□□□□ -0.71
LIMS3-204ENST00000482065 CST7O76096 145 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 DUSP14O95147 198 aaKnown RBP10.64□□□□□ -0.71
LIMS3-204ENST00000482065 HBE1P02100 147 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 AMBPP02760 352 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 SNRPCP09234 159 aaKnown RBP10.64□□□□□ -0.71
LIMS3-204ENST00000482065 CXCL3P19876 107 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 FAM222AQ5U5X8 452 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 LINC00305Q7Z4B0 112 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 C2orf50Q96LR7 162 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 IGF2BP2-AS1Q96M15 143 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 DKK2Q9UBU2 259 aa10.64□□□□□ -0.71
LIMS3-204ENST00000482065 CRXO43186 299 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms