RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 NDUFB11Q9NX14 153 aa5.19□□□□□ -1.58
USP54-213ENST00000481991 TRGV1A0A0A0MS02 117 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 A0A0A6YYH2 397 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 A0A0G2JRQ6 117 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 A6NJ64 397 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 E5RGE8 158 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 H7BYZ3 331 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 PRAF2O60831 178 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 CRYGDP07320 174 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 CDKN1BP46527 198 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 ZNF415Q09FC8 603 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 PSG3Q16557 428 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 BSXQ3C1V8 233 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 Q6ZTI0 123 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 FAM219AQ8IW50 185 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 Q8N814 137 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 OR1B1Q8NGR6 318 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 Q9HAA7 133 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 DNAJC4Q9NNZ3 241 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 COPZ2Q9P299 210 aa5.18□□□□□ -1.58
USP54-213ENST00000481991 LOC100506127A0A0U1RQW1 187 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 A8MTW9 85 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 IGLV2-8P01709 118 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 RCVRNP35243 200 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 UCP3P55916 312 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 MEF2DQ14814 521 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 NEGR1Q7Z3B1 354 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 WFDC10BQ8IUB3 73 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 OR8A1Q8NGG7 326 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 TMEM147Q9BVK8 224 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 PARD6GQ9BYG4 376 aaPredicted RBP5.17□□□□□ -1.58
USP54-213ENST00000481991 CACNG5Q9UF02 275 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 FUT9Q9Y231 359 aa5.17□□□□□ -1.58
USP54-213ENST00000481991 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.16□□□□□ -1.58
USP54-213ENST00000481991 TRAV8-2A0A0B4J237 113 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 TRAV12-3A0A0B4J271 114 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 TEX13DA0A0J9YY54 714 aaPredicted RBP5.16□□□□□ -1.58
USP54-213ENST00000481991 CRYM-AS1A6NIL9 109 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 ZNF324O75467 553 aaPredicted RBP5.16□□□□□ -1.58
USP54-213ENST00000481991 NAT1P18440 290 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 KIR3DS1Q14943 382 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 MRPL23Q16540 153 aaKnown RBP5.16□□□□□ -1.58
USP54-213ENST00000481991 LINC01620Q4KN68 170 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 GGNBP1Q5YKI7 109 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 LGI3Q8N145 548 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 OR52E5Q8NH55 327 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 C8orf49Q96NF6 230 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 LINC00467Q9BRT7 94 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 GSN-AS1Q9NRJ2 163 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 HHLA3Q9XRX5 114 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 RCL1Q9Y2P8 373 aaKnown RBP5.16□□□□□ -1.58
USP54-213ENST00000481991 TMEM56-RWDD3S4R434 201 aa5.16□□□□□ -1.58
USP54-213ENST00000481991 IGKV1D-37A0A075B6S9 117 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SMIM31A0A1B0GVY4 71 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 LRCOL1A6NCL2 159 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 LECT2O14960 151 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 TNFAIP8O95379 198 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 C1QBP02746 253 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SNRPCP09234 159 aaKnown RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 ANXA7P20073 488 aaKnown RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 LORP23490 312 aaPredicted RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 GATA2P23769 480 aaPredicted RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 S100A7P31151 101 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SCAND1P57086 179 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SCGB2B2Q4G0G5 96 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SNX29P2Q8IUI4 249 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 SAMD12Q8N8I0 201 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 CCDC71LQ8N9Z2 235 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 ZFAND1Q8TCF1 268 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 TMEM170AQ8WVE7 144 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 PCNPQ8WW12 178 aaKnown RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 RPUSD4Q96CM3 377 aaKnown RBP5.15□□□□□ -1.59
USP54-213ENST00000481991 GPR82Q96P67 336 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 U3KQ87 197 aa5.15□□□□□ -1.59
USP54-213ENST00000481991 TRAV5A0A0B4J249 113 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 TRGV4A0A0C4DH28 118 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 RS1O15537 224 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 SRIP30626 198 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 GPX4P36969 197 aaPredicted RBP5.14□□□□□ -1.59
USP54-213ENST00000481991 RND3P61587 244 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 NMSQ5H8A3 153 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 UBE2NLQ5JXB2 153 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 TMEM268Q5VZI3 342 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 STEAP1BQ6NZ63 245 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 SCXQ7RTU7 201 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 C10orf126Q8N4M7 172 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 LINC00612Q8N6U2 182 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 RBPMSQ93062 196 aaKnown RBP5.14□□□□□ -1.59
USP54-213ENST00000481991 ZNF486Q96H40 463 aaPredicted RBP5.14□□□□□ -1.59
USP54-213ENST00000481991 CNBD2Q96M20 576 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 TRGV9Q99603 122 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 RBKSQ9H477 322 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 PRO0255Q9UI72 69 aa5.14□□□□□ -1.59
USP54-213ENST00000481991 RBFOX3A6NFN3 312 aa5.13□□□□□ -1.59
USP54-213ENST00000481991 K7EP13 123 aa5.13□□□□□ -1.59
USP54-213ENST00000481991 CFDP00746 253 aaPredicted RBP5.13□□□□□ -1.59
USP54-213ENST00000481991 OR5G3P0C626 314 aa5.13□□□□□ -1.59
USP54-213ENST00000481991 GYPEP15421 78 aa5.13□□□□□ -1.59
USP54-213ENST00000481991 CXCL3P19876 107 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms