RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 A0A1W2PPV9 198 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 NDUFS7O75251 213 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 ZNF79Q15937 498 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 FAM104BQ5XKR9 115 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 GPHB5Q86YW7 130 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 DAZ1Q9NQZ3 744 aaKnown RBP4.51□□□□□ -1.69
USF3-202ENST00000478658 BUB1B-PAK6H3BSN5 160 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 UBE2D1P51668 147 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 RPL23P62829 140 aaKnown RBP4.51□□□□□ -1.69
USF3-202ENST00000478658 FAM189BP81408 668 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 DMRTC2Q8IXT2 367 aaPredicted RBP4.51□□□□□ -1.69
USF3-202ENST00000478658 TMEM242Q9NWH2 141 aa4.51□□□□□ -1.69
USF3-202ENST00000478658 ETV2O00321 342 aaPredicted RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 PSMB8P28062 276 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 LTBRP36941 435 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 CCL8P80075 99 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 DMRTC1Q5HYR2 192 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 C1orf194Q5T5A4 169 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 LRP5O75197 1615 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 AHDC1Q5TGY3 1603 aaPredicted RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 SHANK1Q9Y566 2161 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 ZFPL1O95159 310 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 CTRLP40313 264 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 C9orf66Q5T8R8 295 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 BCORL1Q5H9F3 1711 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 IGHV3-64DA0A0J9YX35 117 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 SRSF7Q16629 238 aaKnown RBP eCLIP4.5□□□□□ -1.69
USF3-202ENST00000478658 C1orf53Q5VUE5 145 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 ZNF493Q6ZR52 646 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 ITLN1Q8WWA0 313 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 TRGV9Q99603 122 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 TRAV3A0A0B4J244 114 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 PEBP1P30086 187 aaKnown RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 RPL34P49207 117 aaKnown RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 ZNF876PQ49A33 203 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 Q8NFD4 153 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 C1orf159Q96HA4 380 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 CYTL1Q9NRR1 136 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 MRPL27Q9P0M9 148 aaKnown RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 NOTCH3Q9UM47 2321 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 ZSWIM8A7E2V4 1837 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 PRSS29PA6NIE9 313 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 FXYD1O00168 92 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 APELAP0DMC3 54 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 CDKN1BP46527 198 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 CCL4L1Q8NHW4 92 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 OPRPNQ99935 248 aaPredicted RBP4.5□□□□□ -1.69
USF3-202ENST00000478658 KIDINS220Q9ULH0 1771 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 AGRNO00468 2067 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 A0A1W2PRX2 142 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 ICOSQ9Y6W8 199 aa4.5□□□□□ -1.69
USF3-202ENST00000478658 XCL1P47992 114 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 ZNF664Q8N3J9 261 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 CAMTA1Q9Y6Y1 1673 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 C5orf63A6NC05 138 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 VSIG8P0DPA2 414 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 DAZ2Q13117 558 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 DAZ4Q86SG3 579 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 DAZ3Q9NR90 486 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 PLXNB1O43157 2135 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 FAM231BA6NCW3 169 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 IGHMP01871 453 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 NANOS3P60323 173 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 KLHL30-AS1Q8NEE0 82 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 FGF22Q9HCT0 170 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 CACNA1BQ00975 2339 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 TRBV24-1A0A075B6N3 115 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 NTN3O00634 580 aaPredicted RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 BUB3O43684 328 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 MRPL23Q16540 153 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 ZC2HC1BQ5TFG8 222 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 FANCD2OSQ96PS1 177 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 FNDC4Q9H6D8 234 aaPredicted RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 PLXNA2O75051 1894 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 IGKV6-21A0A0C4DH24 114 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 TCL1BO95988 128 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 ZCCHC24Q8N2G6 241 aaKnown RBP4.49□□□□□ -1.69
USF3-202ENST00000478658 SLC25A29Q8N8R3 303 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 LIME1Q9H400 295 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 ARHGAP21Q5T5U3 1957 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 H3BUA1 57 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 SERP2Q8N6R1 65 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 TMEM133Q9H2Q1 129 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 WNK1Q9H4A3 2382 aa4.49□□□□□ -1.69
USF3-202ENST00000478658 RNASE2P10153 161 aaKnown RBP4.48□□□□□ -1.69
USF3-202ENST00000478658 TMEM240Q5SV17 173 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 ZNF826PQ6ZT77 177 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 C3orf22Q8N5N4 141 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 HS3ST6Q96QI5 342 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 ATP6V0BQ99437 205 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 LINC00474Q9P2X8 69 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 A0A1W2PQF6 199 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 NDUFC2-KCTD14E9PQ53 114 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 CFHR4Q92496 578 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 MIXL1Q9H2W2 232 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 E9PLN8 166 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 PGLYRP1O75594 196 aaPredicted RBP4.48□□□□□ -1.69
USF3-202ENST00000478658 ZC2HC1AQ96GY0 325 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 G3V4G9 280 aa4.48□□□□□ -1.69
USF3-202ENST00000478658 C1QAP02745 245 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms