RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 ZNF705DP0CH99 300 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF705BP0CI00 300 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF846Q147U1 533 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 PXDC1Q5TGL8 231 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 FAM78BQ5VT40 261 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 TEPPQ6URK8 271 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF709Q8N972 641 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF431Q8TF32 576 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-223ENST00000476519 C17orf77Q96MU5 243 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 MGAT4CQ9UBM8 478 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 HIGD1AQ9Y241 93 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 C7orf66A4D0T2 115 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 IGLL5B9A064 214 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 H3BRN7 92 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 LINC00869P0C866 280 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 DEFB1P60022 68 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 RRAS2P62070 204 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-223ENST00000476519 C12orf74Q32Q52 190 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 C20orf173Q96LM9 149 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 DOK5Q9P104 306 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 APLNQ9ULZ1 77 aa8.68□□□□□ -1.02
SYNE1-223ENST00000476519 RCL1Q9Y2P8 373 aaKnown RBP8.68□□□□□ -1.02
SYNE1-223ENST00000476519 TRAV6A0A075B6T7 132 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 A8MTW9 85 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 L7N2F9 121 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 CCNKO75909 580 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 DUSP14O95147 198 aaKnown RBP8.67□□□□□ -1.02
SYNE1-223ENST00000476519 OR5G3P0C626 314 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 SPART-AS1P0CW21 52 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 VAMP2P63027 116 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 Q6ZTC4 211 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 RNF126Q9BV68 326 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 SCRT1Q9BWW7 348 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 NUDT15Q9NV35 164 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 GOLT1BQ9Y3E0 138 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 RFNGQ9Y644 331 aa8.67□□□□□ -1.02
SYNE1-223ENST00000476519 TRAV8-2A0A0B4J237 113 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 FAM240BA0A1B0GVZ2 78 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 C5orf51A6NDU8 294 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 F6UB75 175 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 GOSR2O14653 212 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 AMBPP02760 352 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 H2AFB2P0C5Z0 115 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 FXYD7P58549 80 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 ARL16Q0P5N6 197 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 RAB31Q13636 194 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 MZT2BQ6NZ67 158 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF546Q86UE3 836 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 C12orf45Q8N5I9 185 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-223ENST00000476519 S100ZQ8WXG8 99 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 C2orf50Q96LR7 162 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 ARL6Q9H0F7 186 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 SLC35B3Q9H1N7 401 aa8.66□□□□□ -1.02
SYNE1-223ENST00000476519 A0A087X0K7 114 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 DEFB131BA0A096LNP1 70 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 TEX48A0A1B0GUV7 120 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 FAM25EA8MYX2 175 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 AGPAT2O15120 278 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 PVALBP20472 110 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-223ENST00000476519 FGL1Q08830 312 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 SLC38A11Q08AI6 406 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 AMTNQ6UX39 209 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 GSG1LQ6UXU4 331 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 PATE2Q6UY27 113 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 C1orf158Q8N1D5 194 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 RPP25LQ8N5L8 163 aaKnown RBP8.65□□□□□ -1.02
SYNE1-223ENST00000476519 IGF2BP2-AS1Q96M15 143 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 ARV1Q9H2C2 271 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 CELA1Q9UNI1 258 aa8.65□□□□□ -1.02
SYNE1-223ENST00000476519 FRAS1Q86XX4 4008 aa8.65□□□□□ -1.03
SYNE1-223ENST00000476519 DNAH6Q9C0G6 4158 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 IGHV3OR16-12A0A075B7B8 117 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 CCSO14618 274 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 HBE1P02100 147 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 BCAP31P51572 246 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 CNN1P51911 297 aaKnown RBP8.64□□□□□ -1.03
SYNE1-223ENST00000476519 B2MP61769 119 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 IL15RAQ13261 267 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 UHRF2Q96PU4 802 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 SEC22CQ9BRL7 303 aa8.64□□□□□ -1.03
SYNE1-223ENST00000476519 LSM5Q9Y4Y9 91 aaKnown RBP8.64□□□□□ -1.03
SYNE1-223ENST00000476519 IGHV4-4A0A075B6R2 117 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 CXCL2P19875 107 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 CXCL3P19876 107 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 S100A11P31949 105 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 CAV2P51636 162 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 EMP1P54849 157 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 ASAH1Q13510 395 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 OXA1LQ15070 435 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 PSG3Q16557 428 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 RRN3P1Q2M238 152 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 IGFL4Q6B9Z1 124 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 Q6ZRG5 221 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 LINC00305Q7Z4B0 112 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 OR11H7Q8NGC8 314 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 LRRC20Q8TCA0 184 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 FAM210BQ96KR6 192 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 MGST2Q99735 147 aa8.63□□□□□ -1.03
SYNE1-223ENST00000476519 C11orf1Q9H5F2 150 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms