RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DKK2Q9UBU2 259 aa13.41□□□□□ -0.26
CCDC88B-206ENST00000473405 TRAV8-2A0A0B4J237 113 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 H3BRN7 92 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 OR4E1P0C645 316 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 FAM222AQ5U5X8 452 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 TRIQKQ629K1 86 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 GPR82Q96P67 336 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 NDUFAF3Q9BU61 184 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 TMEM147Q9BVK8 224 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 PSENENQ9NZ42 101 aa13.4□□□□□ -0.26
CCDC88B-206ENST00000473405 CCNKO75909 580 aa13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 IGFL4Q6B9Z1 124 aa13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 CYP2G1PQ6ZSU1 146 aa13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 SLC25A39Q9BZJ4 359 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 PTTG2Q9NZH5 202 aa13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 GOLT1BQ9Y3E0 138 aa13.39□□□□□ -0.27
CCDC88B-206ENST00000473405 SMCO3A2RU48 225 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 ANXA7P20073 488 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 INPP1P49441 399 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 TMEM14EPQ6UXP3 125 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 RNF182Q8N6D2 247 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 SMIM8Q96KF7 97 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 SHANK2-AS3Q9BTD1 123 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 PCLOQ9Y6V0 5065 aa13.38□□□□□ -0.27
CCDC88B-206ENST00000473405 TEX48A0A1B0GUV7 120 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 LOC102723971A0A1B0GUV8 181 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 LINC00854A0A1B0GVQ3 168 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 HBE1P02100 147 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 IL5P05113 134 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 LINC00869P0C866 280 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 P0DMU3 169 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 FAM231AP0DMU4 169 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 FAM231CP0DMU5 169 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 CNN1P51911 297 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 PLP1P60201 277 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 POM121L12Q8N7R1 296 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 IGF2BP2-AS1Q96M15 143 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 C7orf50Q9BRJ6 194 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 NIPSNAP3BQ9BS92 247 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 PLA2G2EQ9NZK7 142 aa13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 YTHDF2Q9Y5A9 579 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-206ENST00000473405 IFNA21P01568 189 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 METTL15P1P0C7V9 234 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 RRAS2P62070 204 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 DLK1P80370 383 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 C4orf46Q504U0 113 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 OR11H7Q8NGC8 314 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 UHRF2Q96PU4 802 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 HIGD1AQ9Y241 93 aa13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 RCL1Q9Y2P8 373 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-206ENST00000473405 K7EPK0 472 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 M0R2Z0 102 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 CRXO43186 299 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 HYPMO75409 117 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 IL7P13232 177 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 S100A7P31151 101 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 SELENOTP62341 195 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 SPINK13Q1W4C9 94 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 IAH1Q2TAA2 248 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 NACAE9PAV3 2078 aa13.35□□□□□ -0.27
CCDC88B-206ENST00000473405 FNDC10F2Z333 226 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 SCGB1D2O95969 90 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 RPL7P18124 248 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 RAP2BP61225 183 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 FGL1Q08830 312 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 OXA1LQ15070 435 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 RRN3P1Q2M238 152 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 PATE2Q6UY27 113 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 ZBTB8BQ8NAP8 495 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 MITD1Q8WV92 249 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 FAM210BQ96KR6 192 aa13.34□□□□□ -0.27
CCDC88B-206ENST00000473405 A0A087X0K7 114 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 TSC22D2O75157 780 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 DUSP14O95147 198 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 INSP01308 110 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 PRM2P04554 102 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 OR5G3P0C626 314 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 TAS2R30P59541 319 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 SLC38A11Q08AI6 406 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 BAP18Q8IXM2 172 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 TMEM208Q9BTX3 173 aa13.33□□□□□ -0.28
CCDC88B-206ENST00000473405 CENPXA8MT69 81 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 CXCL3P19876 107 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 ARL16Q0P5N6 197 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 TEPPQ6URK8 271 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 LINC00336Q6ZUF6 198 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 ZNF738Q8NE65 137 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 ARL6Q9H0F7 186 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 NPVFQ9HCQ7 196 aa13.32□□□□□ -0.28
CCDC88B-206ENST00000473405 C7orf66A4D0T2 115 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 MRPS12O15235 138 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 MBPP02686 304 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 HTN3P15516 51 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 LINC00299Q6ZSB3 139 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 OR10P1Q8NGE3 313 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 KRTAP17-1Q9BYP8 105 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 C20orf85Q9H1P6 137 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 GSKIPQ9P0R6 139 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 MGAT4CQ9UBM8 478 aa13.31□□□□□ -0.28
CCDC88B-206ENST00000473405 A0A1B0GVY2 172 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms