RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TFPI2P48307 235 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 RAB2AP61019 212 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 OR1L4Q8NGR5 311 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 PFDN5Q99471 154 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 PSMG3Q9BT73 122 aaPredicted RBP11.07□□□□□ -0.64
COL9A3-209ENST00000469852 ZNF471Q9BX82 626 aaPredicted RBP11.07□□□□□ -0.64
COL9A3-209ENST00000469852 MS4A6AQ9H2W1 248 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 SEPSECSQ9HD40 501 aaKnown RBP11.07□□□□□ -0.64
COL9A3-209ENST00000469852 KCNIP2Q9NS61 270 aa11.07□□□□□ -0.64
COL9A3-209ENST00000469852 MRPS12O15235 138 aaKnown RBP11.06□□□□□ -0.64
COL9A3-209ENST00000469852 CD7P09564 240 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 RPL11P62913 178 aaKnown RBP11.06□□□□□ -0.64
COL9A3-209ENST00000469852 C1orf194Q5T5A4 169 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 MIR17HGQ75NE6 70 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 WFDC3Q8IUB2 231 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 OR8I2Q8N0Y5 310 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 FAM24BQ8N5W8 94 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 STXBP6Q8NFX7 210 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 OR2G3Q8NGZ4 309 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 GATAD1Q8WUU5 269 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 AURKAIP1Q9NWT8 199 aaPredicted RBP11.06□□□□□ -0.64
COL9A3-209ENST00000469852 PLA2G2EQ9NZK7 142 aa11.06□□□□□ -0.64
COL9A3-209ENST00000469852 BOLA2-SMG1P6H3BVE0 249 aa11.05□□□□□ -0.64
COL9A3-209ENST00000469852 SNRPCP09234 159 aaKnown RBP11.05□□□□□ -0.64
COL9A3-209ENST00000469852 FAM78BQ5VT40 261 aa11.05□□□□□ -0.64
COL9A3-209ENST00000469852 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
COL9A3-209ENST00000469852 GNPNAT1Q96EK6 184 aaPredicted RBP11.05□□□□□ -0.64
COL9A3-209ENST00000469852 SPAG8Q99932 426 aaPredicted RBP11.05□□□□□ -0.64
COL9A3-209ENST00000469852 WFDC10AQ9H1F0 79 aa11.05□□□□□ -0.64
COL9A3-209ENST00000469852 PFDN2Q9UHV9 154 aa11.05□□□□□ -0.64
COL9A3-209ENST00000469852 HELTA6NFD8 242 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 SPP1P10451 314 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 Q8N1Y9 231 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 FAM167A-AS1Q96KT0 104 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 SLC25A2Q9BXI2 301 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 FUT9Q9Y231 359 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 BOLA1Q9Y3E2 137 aa11.04□□□□□ -0.64
COL9A3-209ENST00000469852 K7EIL1 84 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 K7EQG2 157 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 CD5P06127 495 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 M6PRP20645 277 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 CD81P60033 236 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 ACOT6Q3I5F7 207 aaPredicted RBP11.03□□□□□ -0.64
COL9A3-209ENST00000469852 ODF3L2Q3SX64 289 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 FAM122CQ6P4D5 195 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 SSX7Q7RTT5 188 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 RPP25LQ8N5L8 163 aaKnown RBP11.03□□□□□ -0.64
COL9A3-209ENST00000469852 OR10G4Q8NGN3 311 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 OR10G9Q8NGN4 311 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 OR10G7Q8NGN6 311 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 NRN1Q9NPD7 142 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 C19orf73Q9NVV2 129 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 UBQLN2Q9UHD9 624 aa11.03□□□□□ -0.64
COL9A3-209ENST00000469852 OR4C46A6NHA9 309 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 H3BTX0 84 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 DNASE2O00115 360 aaPredicted RBP11.02□□□□□ -0.65
COL9A3-209ENST00000469852 SOCS3O14543 225 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 PYYP10082 97 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 RPL7P18124 248 aaKnown RBP11.02□□□□□ -0.65
COL9A3-209ENST00000469852 GALR1P47211 349 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 SERF2P84101 59 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF124Q15973 351 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 BAP18Q8IXM2 172 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 STOML3Q8TAV4 291 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF503Q96F45 646 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 GPR82Q96P67 336 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 MRPL32Q9BYC8 188 aaKnown RBP11.02□□□□□ -0.65
COL9A3-209ENST00000469852 RPRMQ9NS64 109 aa11.02□□□□□ -0.65
COL9A3-209ENST00000469852 H3BQ15 152 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 HMGB3O15347 200 aaKnown RBP11.01□□□□□ -0.65
COL9A3-209ENST00000469852 IGLC2P0DOY2 106 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 TPT1P13693 172 aaKnown RBP11.01□□□□□ -0.65
COL9A3-209ENST00000469852 S100A7P31151 101 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF726P1Q15940 193 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 TMEM41BQ5BJD5 291 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 S100A7AQ86SG5 101 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 BPIFA4PQ86YQ2 179 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 MAP6D1Q9H9H5 199 aa11.01□□□□□ -0.65
COL9A3-209ENST00000469852 ZMAT5Q9UDW3 170 aaKnown RBP11.01□□□□□ -0.65
COL9A3-209ENST00000469852 A0A087X0K7 114 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 TRAV2A0A0B4J234 112 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 SLC17A3O00476 420 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF688P0C7X2 276 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 ATF4P18848 351 aaPredicted RBP11□□□□□ -0.65
COL9A3-209ENST00000469852 RHOBP62745 196 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 PAFAH1B2P68402 229 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 IGFL4Q6B9Z1 124 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 GTSCR1Q86UQ5 136 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 DEFB125Q8N687 156 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 TMED6Q8WW62 240 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 CITED4Q96RK1 184 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 ZNF586Q9NXT0 402 aa11□□□□□ -0.65
COL9A3-209ENST00000469852 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 OR10J4P0C629 311 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 SEC11BP0C7V7 166 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 HLA-DMBP28068 263 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 CDC34P49427 236 aaPredicted RBP10.99□□□□□ -0.65
COL9A3-209ENST00000469852 FHITP49789 147 aa10.99□□□□□ -0.65
COL9A3-209ENST00000469852 DEFB1P60022 68 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms