RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ARL6Q9H0F7 186 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 MS4A6AQ9H2W1 248 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 SRD5A3Q9H8P0 318 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 DOK5Q9P104 306 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 HIGD1AQ9Y241 93 aa8.82□□□□□ -1
SQSTM1-206ENST00000466342 FXYD6-FXYD2A0A087WZ82 144 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 H3BRN7 92 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 OR5G3P0C626 314 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 RPL29P47914 159 aaKnown RBP8.81□□□□□ -1
SQSTM1-206ENST00000466342 TFPI2P48307 235 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PRR20EP86478 221 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PRR20CP86479 221 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PRR20DP86480 221 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PRR20BP86481 221 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PRR20AP86496 221 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 MIC13Q5XKP0 118 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 SIGLEC15Q6ZMC9 328 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 GBGT1Q8N5D6 347 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 KRTAP4-5Q9BYR2 181 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 SLC25A39Q9BZJ4 359 aaPredicted RBP8.81□□□□□ -1
SQSTM1-206ENST00000466342 SMIM3Q9BZL3 60 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 WDR61Q9GZS3 305 aaKnown RBP8.81□□□□□ -1
SQSTM1-206ENST00000466342 FBXL17Q9UF56 701 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 PKHD1P08F94 4074 aa8.81□□□□□ -1
SQSTM1-206ENST00000466342 CXorf65A6NEN9 183 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 ZNF98A6NK75 572 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 DNASE2O00115 360 aaPredicted RBP8.8□□□□□ -1
SQSTM1-206ENST00000466342 B2MP61769 119 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 ODF3L2Q3SX64 289 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 LGALS9CQ6DKI2 356 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 CEMP1Q6PRD7 247 aaPredicted RBP8.8□□□□□ -1
SQSTM1-206ENST00000466342 PATE2Q6UY27 113 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 Q6ZRG5 221 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 S100A7AQ86SG5 101 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 OR8I2Q8N0Y5 310 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 STXBP6Q8NFX7 210 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 UHRF2Q96PU4 802 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 SHANK2-AS3Q9BTD1 123 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 SCRT1Q9BWW7 348 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 WFDC10AQ9H1F0 79 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 ARV1Q9H2C2 271 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 SLC25A32Q9H2D1 315 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 KCNIP2Q9NS61 270 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 SLC39A9Q9NUM3 307 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 TNFSF18Q9UNG2 199 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 PXMP4Q9Y6I8 212 aa8.8□□□□□ -1
SQSTM1-206ENST00000466342 ELOA3CA0A087WX78 387 aaPredicted RBP8.79□□□□□ -1
SQSTM1-206ENST00000466342 RNF222A6NCQ9 220 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 K7EQG2 157 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 COX7A2P2O60397 106 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 IFNA5P01569 189 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 PMS2P11Q13670 270 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 C10orf113Q5VZT2 155 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 WFDC3Q8IUB2 231 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 INO80EQ8NBZ0 244 aaPredicted RBP8.79□□□□□ -1
SQSTM1-206ENST00000466342 OR1L4Q8NGR5 311 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 DCANP1Q8TF63 244 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 TMEM37Q8WXS4 190 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 GPR82Q96P67 336 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 PARD6GQ9BYG4 376 aaPredicted RBP8.79□□□□□ -1
SQSTM1-206ENST00000466342 SLC25A22Q9H936 323 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 WFDC1Q9HC57 220 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 NRN1Q9NPD7 142 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 UBQLN2Q9UHD9 624 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 RNF24Q9Y225 148 aa8.79□□□□□ -1
SQSTM1-206ENST00000466342 LOC102724200A0A096LPH7 203 aaPredicted RBP8.78□□□□□ -1
SQSTM1-206ENST00000466342 C17orf112F2Z3M2 114 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 SMLR1H3BR10 107 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 CMC4P56277 68 aaPredicted RBP8.78□□□□□ -1
SQSTM1-206ENST00000466342 LEMD1Q68G75 181 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 LINC00305Q7Z4B0 112 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 ZNF709Q8N972 641 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 SCGB1C1Q8TD33 95 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 PFDN5Q99471 154 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 MAP6D1Q9H9H5 199 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 DNAJC4Q9NNZ3 241 aa8.78□□□□□ -1
SQSTM1-206ENST00000466342 KLK5Q9Y337 293 aaPredicted RBP8.78□□□□□ -1
SQSTM1-206ENST00000466342 DNAH6Q9C0G6 4158 aa8.77□□□□□ -1
SQSTM1-206ENST00000466342 ARPC5O15511 151 aa8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 RPL7P18124 248 aaKnown RBP8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 GALR1P47211 349 aa8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 ZNF266Q14584 549 aa8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 FAM24BQ8N5W8 94 aa8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 RSG1Q9BU20 258 aa8.77□□□□□ -1.01
SQSTM1-206ENST00000466342 hCG_2014768A0A024R1R8 64 aa8.76□□□□□ -1.01
SQSTM1-206ENST00000466342 MEOX2P50222 304 aa8.76□□□□□ -1.01
SQSTM1-206ENST00000466342 MORN5Q5VZ52 161 aa8.76□□□□□ -1.01
SQSTM1-206ENST00000466342 ST6GAL2Q96JF0 529 aa8.76□□□□□ -1.01
SQSTM1-206ENST00000466342 SEPSECSQ9HD40 501 aaKnown RBP8.76□□□□□ -1.01
SQSTM1-206ENST00000466342 HMSDA8MTL9 139 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 SOCS3O14543 225 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 ZNF688P0C7X2 276 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 APOC4P55056 127 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 DEFB131AP59861 70 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 GCSAMLQ5JQS6 135 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 SAMD13Q5VXD3 122 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 APRG1Q8IVJ8 170 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 OR11H4Q8NGC9 324 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 MFFQ9GZY8 342 aa8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 TIMM9Q9Y5J7 89 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms