RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 FAM104BQ5XKR9 115 aa5.72□□□□□ -1.49
SYNE1-216ENST00000461872 TRBV20OR9-2A0A075B6H5 130 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 NPIPB6E9PJ23 425 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 IGHV1-8P0DP01 117 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 SAMD5Q5TGI4 173 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 C9orf139Q6ZV77 190 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 LHBP01229 141 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 IGF2BP2-AS1Q96M15 143 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 GAFA1Q96PS6 74 aa5.71□□□□□ -1.49
SYNE1-216ENST00000461872 FCGR2BP31994 310 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-216ENST00000461872 MPV17L2Q567V2 206 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 SPRR3Q9UBC9 169 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 ARHGAP21Q5T5U3 1957 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 DGAT2L7PQ6IED9 249 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-216ENST00000461872 CIRBPQ14011 172 aaKnown RBP5.71□□□□□ -1.5
SYNE1-216ENST00000461872 HCP5Q6MZN7 132 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 CST9LQ9H4G1 147 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 IGHV1-46P01743 117 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 EIF4EBP1Q13541 118 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-216ENST00000461872 ASIPP42127 132 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 UQCRFS1P47985 274 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 C9orf106Q8NAJ2 232 aa5.71□□□□□ -1.5
SYNE1-216ENST00000461872 FAM216BQ8N7L0 139 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 RAB37Q96AX2 223 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 IGLC7A0M8Q6 106 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 CYSLTR1Q9Y271 337 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 FOXL2P58012 376 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 WDR86Q86TI4 376 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 TRBV19A0A075B6N1 114 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 IGLV2-14P01704 120 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 COX7A1P24310 79 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 GAGE13Q4V321 117 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 YAE1D1Q9NRH1 226 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 FXYD5Q96DB9 178 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF479Q96JC4 524 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 TMEM178BH3BS89 294 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 FOXH1O75593 365 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 AMMECR1LQ6DCA0 310 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 AMN1Q8IY45 258 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 PINLYPA6NC86 204 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 MRPL16Q9NX20 251 aaKnown RBP5.7□□□□□ -1.5
SYNE1-216ENST00000461872 SIGLEC9Q9Y336 463 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 SELLP14151 372 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF493Q6ZR52 646 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 NEGR1Q7Z3B1 354 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 KIR3DL3Q8N743 410 aa5.7□□□□□ -1.5
SYNE1-216ENST00000461872 AKIRIN1Q9H9L7 192 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-216ENST00000461872 BVES-AS1Q5T3Y7 98 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ATOH7Q8N100 152 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 DLX4Q92988 240 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-216ENST00000461872 TLN1Q9Y490 2541 aaKnown RBP5.69□□□□□ -1.5
SYNE1-216ENST00000461872 CDKN1AP38936 164 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 SLAQ13239 276 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 LINC00477Q96M19 166 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 NPIPB5A8MRT5 1133 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 PYYP10082 97 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 GUSBP1Q15486 140 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF256Q9Y2P7 627 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-216ENST00000461872 TRAV21A0A0B4J279 112 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 H3BUT2 72 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 PSG1P11464 419 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF581Q9P0T4 197 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 WNK1Q9H4A3 2382 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 IGFL2Q6UWQ7 119 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 C20orf78Q9BR46 151 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 SIGLEC8Q9NYZ4 499 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 RAXQ9Y2V3 346 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 TMEM238C9JI98 176 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 LGALS3P17931 250 aaKnown RBP5.69□□□□□ -1.5
SYNE1-216ENST00000461872 DEFB123Q8N688 67 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 TRBV7-1A0A0A6YYK4 115 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ALKBH6Q3KRA9 238 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 OVOL2Q9BRP0 275 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 CEACAM4O75871 244 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ATP5G2Q06055 141 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 ZNF295-AS1Q8N0V1 137 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 VKORC1Q9BQB6 163 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 DCTN5Q9BTE1 182 aa5.69□□□□□ -1.5
SYNE1-216ENST00000461872 A0A1B0GXF2 115 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 PSMB11A5LHX3 300 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 LEPP41159 167 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 FAM106AQ4KMX7 169 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 RNASE6Q93091 150 aaKnown RBP5.68□□□□□ -1.5
SYNE1-216ENST00000461872 TRBV7-9A0A0J9YWB2 115 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 PATE3B3GLJ2 98 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 C16orf92Q96LL3 132 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 K7EN84 100 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 IGLL1P15814 213 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 KIR3DS1Q14943 382 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 PRSS22Q9GZN4 317 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 LOC105371242A0A075B767 164 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 CRYGCP07315 174 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 C17orf58Q2M2W7 97 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 C11orf53Q8IXP5 236 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 DKK4Q9UBT3 224 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 WISP1O95388 367 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 Q8N8P6 123 aa5.68□□□□□ -1.5
SYNE1-216ENST00000461872 H3BVH4 76 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms