RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DDB2Q92466 427 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 F11RQ9Y624 299 aaKnown RBP9.37□□□□□ -0.91
NPHP4-204ENST00000460696 M0QZK8 103 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 THBDP07204 575 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 CX3CL1P78423 397 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 FNDC10F2Z333 226 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 P0C879 139 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 PF4V1P10720 104 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 CKS2P33552 79 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 POU2AF1Q16633 256 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 WFDC3Q8IUB2 231 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 FMC1Q96HJ9 113 aa9.37□□□□□ -0.91
NPHP4-204ENST00000460696 ARHGAP32A7KAX9 2087 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 TRBV20OR9-2A0A075B6H5 130 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 NDUFS6O75380 124 aaKnown RBP9.36□□□□□ -0.91
NPHP4-204ENST00000460696 KCNS1Q96KK3 526 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 SLC25A39Q9BZJ4 359 aaPredicted RBP9.36□□□□□ -0.91
NPHP4-204ENST00000460696 UQCR10Q9UDW1 63 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 HSPB8Q9UJY1 196 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 A0A1B0GUT8 65 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 ZNF324O75467 553 aaPredicted RBP9.36□□□□□ -0.91
NPHP4-204ENST00000460696 IGHV2-70P01814 119 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 RBPMS2Q6ZRY4 209 aaKnown RBP9.36□□□□□ -0.91
NPHP4-204ENST00000460696 C1orf229Q6ZS94 237 aaPredicted RBP9.36□□□□□ -0.91
NPHP4-204ENST00000460696 ST6GALNAC6Q969X2 333 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 LINC00527Q9UJ94 153 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 PMCHL1Q16048 86 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 TPTE2P1Q5T6R2 138 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 TRGV9Q99603 122 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 OTORQ9NRC9 128 aa9.36□□□□□ -0.91
NPHP4-204ENST00000460696 M0R3E3 92 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 TCRAP04437 139 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 TSKUQ8WUA8 353 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 TMEM78Q5T7P6 136 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 TMEM136Q6ZRR5 245 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 NUP35Q8NFH5 326 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 C16orf92Q96LL3 132 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 DUX5Q96PT3 197 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 LY96Q9Y6Y9 160 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 A0A1B0GWJ7 208 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 TYMSP04818 313 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 COL5A1-AS1Q5SY13 56 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 CLEC19AQ6UXS0 136 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 METTL26Q96S19 204 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 PMCHL2Q9BQD1 86 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 AP5S1Q9NUS5 200 aa9.35□□□□□ -0.91
NPHP4-204ENST00000460696 IGKV1OR2-108A0A075B7D4 117 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 K7EN84 100 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 BMI1P35226 326 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 SPANXN1Q5VSR9 72 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 PSG8Q9UQ74 426 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 NDUFS7O75251 213 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 PTTG1IPP53801 180 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 MORN5Q5VZ52 161 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 ZNF329Q86UD4 541 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 SH2D7A6NKC9 451 aaPredicted RBP9.34□□□□□ -0.91
NPHP4-204ENST00000460696 E7EUB6 86 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 HAX1O00165 279 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 BTF3P20290 206 aaKnown RBP9.34□□□□□ -0.91
NPHP4-204ENST00000460696 LCN12Q6JVE5 192 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 FAM168AQ92567 244 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 TMEM70Q9BUB7 260 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 SLC25A2Q9BXI2 301 aa9.34□□□□□ -0.91
NPHP4-204ENST00000460696 CBY3A6NI87 242 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 IFITM10A6NMD0 228 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 DLX6P56179 175 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 PSG9Q00887 426 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 LBHQ53QV2 105 aaPredicted RBP9.33□□□□□ -0.92
NPHP4-204ENST00000460696 RITA1Q96K30 269 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 V9GYV3 84 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 SHISA9B4DS77 424 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 M0QZ24 198 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 RNF151Q2KHN1 245 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 VMO1Q7Z5L0 202 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 DSCAMO60469 2012 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 ITPR3Q14573 2671 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 F5H697 171 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 TFPI2P48307 235 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 RPL15P61313 204 aaKnown RBP9.33□□□□□ -0.92
NPHP4-204ENST00000460696 C5orf64Q2M2E5 130 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 IGFL4Q6B9Z1 124 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 PVRIGQ6DKI7 326 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 LINC00469Q8N7U9 141 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 DMXL1Q9Y485 3027 aa9.33□□□□□ -0.92
NPHP4-204ENST00000460696 APOHP02749 345 aaPredicted RBP9.32□□□□□ -0.92
NPHP4-204ENST00000460696 FAM71F2Q6NXP2 309 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 PYGO2Q9BRQ0 406 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 DMXL2Q8TDJ6 3036 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 SMIM17P0DL12 118 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 CGB3P0DN86 165 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 CGB7P0DN87 165 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 ZNF738Q8NE65 137 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 RHOGP84095 191 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 SAPCD1Q5SSQ6 148 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 OR4C5Q8NGB2 326 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 C11orf52Q96A22 123 aa9.32□□□□□ -0.92
NPHP4-204ENST00000460696 OR4C46A6NHA9 309 aa9.31□□□□□ -0.92
NPHP4-204ENST00000460696 SIAH2O43255 324 aa9.31□□□□□ -0.92
NPHP4-204ENST00000460696 NIT1Q86X76 327 aa9.31□□□□□ -0.92
NPHP4-204ENST00000460696 LINC00311Q8N616 119 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms