RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 Q6ZT83 130 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 Q86TA4 180 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 NCOR1P1Q9H4R4 102 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 SSUH2Q9Y2M2 353 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 SIT1Q9Y3P8 196 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 KLRC4-KLRK1H3BQV0 150 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 SMAD7O15105 426 aaKnown RBP9.34□□□□□ -0.91
CPSF3-202ENST00000460593 SLC25A17O43808 307 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 FXYD2P54710 66 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 ADAMTSL5Q6ZMM2 481 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 AMN1Q8IY45 258 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 C9orf106Q8NAJ2 232 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 ATMQ13315 3056 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 DMXL1Q9Y485 3027 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 A0A1B0GUT8 65 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 CSN1S1P47710 185 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 LYZP61626 148 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 BOD1L2Q8IYS8 172 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 CACNG8Q8WXS5 425 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 ABHD17AQ96GS6 310 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 SIGLEC8Q9NYZ4 499 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 A0A1W2PPI3 338 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 HAX1O00165 279 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 GP9P14770 177 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 KIR2DL2P43627 348 aaPredicted RBP9.34□□□□□ -0.91
CPSF3-202ENST00000460593 ZCCHC24Q8N2G6 241 aaKnown RBP9.34□□□□□ -0.91
CPSF3-202ENST00000460593 FMC1Q96HJ9 113 aa9.34□□□□□ -0.91
CPSF3-202ENST00000460593 IGKV2D-26A0A0A0MRZ7 120 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.33□□□□□ -0.92
CPSF3-202ENST00000460593 SLC25A48Q6ZT89 311 aaKnown RBP9.33□□□□□ -0.92
CPSF3-202ENST00000460593 ZADH2Q8N4Q0 377 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 MDS2Q8NDY4 140 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 OR5AN1Q8NGI8 311 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 SPAARA0A1B0GVQ0 90 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 M0R1B8 84 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 IGLV2-11P01706 119 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 PSG3Q16557 428 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 SAMD5Q5TGI4 173 aa9.33□□□□□ -0.92
CPSF3-202ENST00000460593 RPUSD1Q9UJJ7 312 aaKnown RBP9.33□□□□□ -0.92
CPSF3-202ENST00000460593 TSSC4Q9Y5U2 329 aaPredicted RBP9.33□□□□□ -0.92
CPSF3-202ENST00000460593 RAI1Q7Z5J4 1906 aaPredicted RBP9.33□□□□□ -0.92
CPSF3-202ENST00000460593 ENSAO43768 121 aaKnown RBP9.32□□□□□ -0.92
CPSF3-202ENST00000460593 HSD52Q0P140 79 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.32□□□□□ -0.92
CPSF3-202ENST00000460593 GAFA1Q96PS6 74 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 SVEP1Q4LDE5 3571 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 FABP2P12104 132 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 WT1P19544 449 aaPredicted RBP9.32□□□□□ -0.92
CPSF3-202ENST00000460593 SH2D6Q7Z4S9 175 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 C8orf49Q96NF6 230 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 ZNF492Q9P255 531 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 M0R3E3 92 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 CRIP1P50238 77 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 WFDC2Q14508 124 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 CT83Q5H943 113 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 ZNF788Q6ZQV5 615 aa9.32□□□□□ -0.92
CPSF3-202ENST00000460593 SOX21Q9Y651 276 aaPredicted RBP9.32□□□□□ -0.92
CPSF3-202ENST00000460593 GAS8-AS1O95177 125 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 CNTFRP26992 372 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 BCL6BQ8N143 479 aaPredicted RBP9.31□□□□□ -0.92
CPSF3-202ENST00000460593 S4R3C0 116 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 NPIPB6E9PJ23 425 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 TNFRSF1AP19438 455 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 APOBEC3AP31941 199 aaPredicted RBP9.31□□□□□ -0.92
CPSF3-202ENST00000460593 DHRS13Q6UX07 377 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 AMTNQ6UX39 209 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 ZNF414Q96IQ9 312 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 PCNX1Q96RV3 2341 aa9.31□□□□□ -0.92
CPSF3-202ENST00000460593 MBNL2Q5VZF2 373 aaKnown RBP9.3□□□□□ -0.92
CPSF3-202ENST00000460593 LCNL1Q6ZST4 164 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 THAP8Q8NA92 274 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 GFRA4Q9GZZ7 299 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 PPIAL4EA0A075B759 164 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 LHBP01229 141 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 PPIAL4FP0DN26 164 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 PRELID3AQ96N28 172 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 NHP2Q9NX24 153 aaKnown RBP9.3□□□□□ -0.92
CPSF3-202ENST00000460593 MGAQ8IWI9 3026 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 RIGQ13278 110 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 RPRMLQ8N4K4 120 aa9.3□□□□□ -0.92
CPSF3-202ENST00000460593 INSL3P51460 131 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 LYZL1Q6UWQ5 148 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 ARPC1AQ92747 370 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 CCL8P80075 99 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 OR10X1Q8NGY0 326 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 OSR1Q8TAX0 266 aaPredicted RBP9.29□□□□□ -0.92
CPSF3-202ENST00000460593 AGRNO00468 2067 aa9.29□□□□□ -0.92
CPSF3-202ENST00000460593 PRSS47A8MTI9 375 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 M0R296 226 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 FCN3O75636 299 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 NPYP01303 97 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 SMIM13P0DJ93 91 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 ATP5G2Q06055 141 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 C16orf54Q6UWD8 224 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 IGFBPL1Q8WX77 278 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 TNFRSF14Q92956 283 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 IFI27L1Q96BM0 104 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 C16orf97H3BN30 126 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 IGLV2-23P01705 113 aa9.28□□□□□ -0.92
CPSF3-202ENST00000460593 RBP4P02753 201 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms