RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 TMEM217Q8N7C4 229 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 OR11H2Q8NH07 326 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 CLUHP3Q96NS8 147 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 SLC25A22Q9H936 323 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 HLA-DRB4X5D2U9 266 aa13.49□□□□□ -0.25
HOXD3-204ENST00000459979 GOSR2O14653 212 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 AGPAT2O15120 278 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 CST7O76096 145 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 C4BPBP20851 252 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 S100A11P31949 105 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 CYCSP99999 105 aaKnown RBP13.48□□□□□ -0.25
HOXD3-204ENST00000459979 PATE2Q6UY27 113 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 CSNK1G2-AS1Q8NCQ2 148 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 RSG1Q9BU20 258 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 SCRT1Q9BWW7 348 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 RNF24Q9Y225 148 aa13.48□□□□□ -0.25
HOXD3-204ENST00000459979 RPL7P18124 248 aaKnown RBP13.47□□□□□ -0.25
HOXD3-204ENST00000459979 NUTF2P61970 127 aaKnown RBP13.47□□□□□ -0.25
HOXD3-204ENST00000459979 SPATA31B1PQ5VZV4 182 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 FOXI2Q6ZQN5 318 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 STX12Q86Y82 276 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 MGST2Q99735 147 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 ARL6Q9H0F7 186 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 C11orf68Q9H3H3 251 aaKnown RBP13.47□□□□□ -0.25
HOXD3-204ENST00000459979 SAV1Q9H4B6 383 aaPredicted RBP13.47□□□□□ -0.25
HOXD3-204ENST00000459979 UQCC1Q9NVA1 299 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 DOK5Q9P104 306 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 WDR83OSQ9Y284 106 aa13.47□□□□□ -0.25
HOXD3-204ENST00000459979 IGSF23A1L1A6 192 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 SIX6O95475 246 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 OR5G3P0C626 314 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 HBG1P69891 147 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 HBG2P69892 147 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 RAB31Q13636 194 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 ATP6V1FQ16864 119 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 CHAC2Q8WUX2 184 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 LINC00052Q96N35 136 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 KRTAP17-1Q9BYP8 105 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 ARV1Q9H2C2 271 aa13.46□□□□□ -0.25
HOXD3-204ENST00000459979 ZNF705EA8MWA4 302 aaPredicted RBP13.45□□□□□ -0.26
HOXD3-204ENST00000459979 RLN2P04090 185 aa13.45□□□□□ -0.26
HOXD3-204ENST00000459979 CAMLGP49069 296 aa13.45□□□□□ -0.26
HOXD3-204ENST00000459979 C16orf92Q96LL3 132 aa13.45□□□□□ -0.26
HOXD3-204ENST00000459979 UHRF2Q96PU4 802 aa13.45□□□□□ -0.26
HOXD3-204ENST00000459979 C1QTNF4Q9BXJ3 329 aa13.45□□□□□ -0.26
HOXD3-204ENST00000459979 ELOA3CA0A087WX78 387 aaPredicted RBP13.44□□□□□ -0.26
HOXD3-204ENST00000459979 A0A087X0K7 114 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 E5RGE8 158 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 H2BFSP57053 126 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 PRR20EP86478 221 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 PRR20CP86479 221 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 PRR20DP86480 221 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 PRR20BP86481 221 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 PRR20AP86496 221 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 GDF5OSQ5U4N7 250 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 RPRMQ9NS64 109 aa13.44□□□□□ -0.26
HOXD3-204ENST00000459979 H0YIZ8 118 aa13.43□□□□□ -0.26
HOXD3-204ENST00000459979 MRPS12O15235 138 aaKnown RBP13.43□□□□□ -0.26
HOXD3-204ENST00000459979 RPL29P47914 159 aaKnown RBP13.43□□□□□ -0.26
HOXD3-204ENST00000459979 TMEM37Q8WXS4 190 aa13.43□□□□□ -0.26
HOXD3-204ENST00000459979 C20orf173Q96LM9 149 aa13.43□□□□□ -0.26
HOXD3-204ENST00000459979 TRAV8-2A0A0B4J237 113 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 A0A0J9YX75 114 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 A8MTW9 85 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 MIFP14174 115 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 DEFB1P60022 68 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 EBLN2Q6P2I7 272 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 Q6ZRG5 221 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 LINC00305Q7Z4B0 112 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 Q8NAQ8 132 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 SLC25A31Q9H0C2 315 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 X6R8D5 127 aa13.42□□□□□ -0.26
HOXD3-204ENST00000459979 FRAS1Q86XX4 4008 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 NUPR2A6NF83 97 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 SSNA1O43805 119 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 MPDU1O75352 247 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 PTTG1O95997 202 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 OPCMLQ14982 345 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 CEMP1Q6PRD7 247 aaPredicted RBP13.41□□□□□ -0.26
HOXD3-204ENST00000459979 PPP1R1CQ8WVI7 109 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 DNAJC4Q9NNZ3 241 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 OR5AC2Q9NZP5 309 aa13.41□□□□□ -0.26
HOXD3-204ENST00000459979 COX7A2P2O60397 106 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 NHLH2Q02577 135 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 BAXQ07812 192 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 C10orf113Q5VZT2 155 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 MIC13Q5XKP0 118 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 RPP25LQ8N5L8 163 aaKnown RBP13.4□□□□□ -0.26
HOXD3-204ENST00000459979 ZNF709Q8N972 641 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 CLEC5AQ9NY25 188 aa13.4□□□□□ -0.26
HOXD3-204ENST00000459979 UBE2L5PA0A1B0GUS4 154 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 F6UB75 175 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 CXCL2P19875 107 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 PSG9Q00887 426 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 LRRC37A5PQ49AS3 106 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 FAM78BQ5VT40 261 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 BPIFA4PQ86YQ2 179 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 OR5C1Q8NGR4 320 aa13.39□□□□□ -0.27
HOXD3-204ENST00000459979 OR1L4Q8NGR5 311 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms