RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 BOLA2Q9H3K6 86 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 IL20Q9NYY1 176 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 LAMTOR3Q9UHA4 124 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 PCTPQ9UKL6 214 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 MIA2Q96PC5 1412 aa0.63□□□□□ -2.31
USP40-209ENST00000452724 ARHGEF28Q8N1W1 1705 aaKnown RBP0.62□□□□□ -2.31
USP40-209ENST00000452724 TRAV27A0A087WT01 109 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 IGLV3-32A0A0A0MS00 114 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 BANF1O75531 89 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 PIAS1O75925 651 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 ERC2-IT1O76042 136 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 CRHP06850 196 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 RAB5CP51148 216 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 CDK6Q00534 326 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 PSG9Q00887 426 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 LINC00322Q6ZN03 302 aaPredicted RBP0.62□□□□□ -2.31
USP40-209ENST00000452724 GRINAQ7Z429 371 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 LYG2Q86SG7 212 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 OR5D16Q8NGK9 328 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 OR5D14Q8NGL3 314 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 CDC26Q8NHZ8 85 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 GPX7Q96SL4 187 aaPredicted RBP0.62□□□□□ -2.31
USP40-209ENST00000452724 PRRT1Q99946 306 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 PBDC1Q9BVG4 233 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 RTL8AQ9BWD3 113 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 CACYBPQ9HB71 228 aaKnown RBP0.62□□□□□ -2.31
USP40-209ENST00000452724 MED29Q9NX70 200 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 SBF1O95248 1867 aa0.62□□□□□ -2.31
USP40-209ENST00000452724 TLCD2A6NGC4 264 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 TRGC2P03986 189 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 IFNA4P05014 189 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 CXCL8P10145 99 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 TCTAP57738 103 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 GNG3P63215 75 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 PHF5AQ7RTV0 110 aaKnown RBP0.61□□□□□ -2.31
USP40-209ENST00000452724 OR10AG1Q8NH19 301 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 PPTC7Q8NI37 304 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 PLEKHB2Q96CS7 222 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 MUCL1Q96DR8 90 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 ZNF714Q96N38 554 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 TAS2R7Q9NYW3 318 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 OR52A1Q9UKL2 312 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 UHRF1BP1Q6BDS2 1440 aa0.61□□□□□ -2.31
USP40-209ENST00000452724 TNRC6AQ8NDV7 1962 aaKnown RBP0.61□□□□□ -2.31
USP40-209ENST00000452724 AHNAKQ09666 5890 aaKnown RBP0.61□□□□□ -2.31
USP40-209ENST00000452724 ZNF106Q9H2Y7 1883 aaKnown RBP0.61□□□□□ -2.31
USP40-209ENST00000452724 DOCK3Q8IZD9 2030 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 RFX7Q2KHR2 1363 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 B4DSR2 109 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 TMEM238C9JI98 176 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 E5RI56 91 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 M0R233 179 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 IGLV1-51P01701 117 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 COX7CP15954 63 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 PPP1R2P41236 205 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 INSL3P51460 131 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 C1orf134Q5TEV5 83 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 C1orf140Q5VVS0 124 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 TEN1Q86WV5 123 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 GKN2Q86XP6 184 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 IFT20Q8IY31 132 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 RAB37Q96AX2 223 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 CHCHD1Q96BP2 118 aaKnown RBP0.6□□□□□ -2.31
USP40-209ENST00000452724 HYLS1Q96M11 299 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 BIN3Q9NQY0 253 aa0.6□□□□□ -2.31
USP40-209ENST00000452724 LAMA4Q16363 1823 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 F8W1H4 67 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 H3BRM9 83 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 LYRM1O43325 122 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 MFSD11O43934 449 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 HIST1H2BKO60814 126 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 HIST1H2BJP06899 126 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 TMBIM6P55061 237 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 ARPP19P56211 112 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 HAGHLQ6PII5 290 aaPredicted RBP0.59□□□□□ -2.31
USP40-209ENST00000452724 KRTAP19-3Q7Z4W3 81 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 ARPINQ7Z6K5 226 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 OR5AS1Q8N127 324 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 STX19Q8N4C7 294 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 Q8N6K4 173 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 PLPP5Q8NEB5 264 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 OR4K15Q8NH41 348 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 POP5Q969H6 163 aaKnown RBP0.59□□□□□ -2.31
USP40-209ENST00000452724 ZHX1-C8orf76Q96EF9 292 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 MAP1LC3BQ9GZQ8 125 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 TNFSF18Q9UNG2 199 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 UFC1Q9Y3C8 167 aa0.59□□□□□ -2.31
USP40-209ENST00000452724 CEP192Q8TEP8 1941 aa0.59□□□□□ -2.32
USP40-209ENST00000452724 CAMSAP1Q5T5Y3 1602 aa0.59□□□□□ -2.32
USP40-209ENST00000452724 EML5Q05BV3 1969 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 OR2T8A6NH00 312 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 PPP5D1E7EU14 171 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 GPR31O00270 319 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 NCR3O14931 201 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 RER1O15258 196 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 DNAL4O96015 105 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 CXCL1P09341 107 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 TAS2R41P59536 307 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 VBP1P61758 197 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 KLRD1Q13241 179 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 175.1 ms