RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TSPOP30536 169 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 CNN1P51911 297 aaKnown RBP9.39□□□□□ -0.91
HMGB3-204ENST00000448905 RAP2BP61225 183 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 SPCS2Q15005 226 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 RAB2BQ8WUD1 216 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 C20orf173Q96LM9 149 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 LINC01587Q99440 93 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 MRPS26Q9BYN8 205 aaKnown RBP9.39□□□□□ -0.91
HMGB3-204ENST00000448905 SLC25A32Q9H2D1 315 aa9.39□□□□□ -0.91
HMGB3-204ENST00000448905 IGKV1OR2-108A0A075B7D4 117 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 IL5P05113 134 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 ATP5G1P05496 136 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 ATP5G3P48201 142 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 RHOBP62745 196 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 AKR1C1Q04828 323 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 SPINK13Q1W4C9 94 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 SPANXN5Q5MJ07 72 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 AMTNQ6UX39 209 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 TMEM256Q8N2U0 113 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 LRTM2Q8N967 370 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 ZNF738Q8NE65 137 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 OR11H7Q8NGC8 314 aa9.38□□□□□ -0.91
HMGB3-204ENST00000448905 SLC25A21Q9BQT8 299 aaPredicted RBP9.38□□□□□ -0.91
HMGB3-204ENST00000448905 CCDC59Q9P031 241 aaKnown RBP9.38□□□□□ -0.91
HMGB3-204ENST00000448905 STRAPQ9Y3F4 350 aaKnown RBP9.38□□□□□ -0.91
HMGB3-204ENST00000448905 NBDYA0A0U1RRE5 68 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 C16orf90A8MZG2 172 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 M0R2Z0 102 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 NOL3O60936 208 aaKnown RBP9.37□□□□□ -0.91
HMGB3-204ENST00000448905 HYPMO75409 117 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 RPL7P18124 248 aaKnown RBP9.37□□□□□ -0.91
HMGB3-204ENST00000448905 TNFSF8P32971 234 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 TMBIM6P55061 237 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 CLINT1Q14677 625 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 ZNF575Q86XF7 245 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 C6orf223Q8N319 242 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 TOMM5Q8N4H5 51 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 BCL7BQ9BQE9 202 aa9.37□□□□□ -0.91
HMGB3-204ENST00000448905 SMIM18P0DKX4 95 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 HTN1P15515 57 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 GATA2P23769 480 aaPredicted RBP9.36□□□□□ -0.91
HMGB3-204ENST00000448905 TAS2R60P59551 318 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 SELENOTP62341 195 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 TMEM144Q7Z5S9 345 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 DYNC2LI1Q8TCX1 351 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 HIGD1AQ9Y241 93 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 TIMM8BQ9Y5J9 83 aaPredicted RBP9.36□□□□□ -0.91
HMGB3-204ENST00000448905 PKHD1P08F94 4074 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 PKD1P98161 4303 aa9.36□□□□□ -0.91
HMGB3-204ENST00000448905 SMCO3A2RU48 225 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 BOLA2-SMG1P6H3BVE0 249 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 CRXO43186 299 aaPredicted RBP9.35□□□□□ -0.91
HMGB3-204ENST00000448905 ADAP1O75689 374 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 OR5G3P0C626 314 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 ANXA7P20073 488 aaKnown RBP9.35□□□□□ -0.91
HMGB3-204ENST00000448905 PYDC2Q56P42 97 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 IGFL4Q6B9Z1 124 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 ZNF493Q6ZR52 646 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 CYP2G1PQ6ZSU1 146 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 RNF182Q8N6D2 247 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 ZNRF2Q8NHG8 242 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 DEDD2Q8WXF8 326 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 SOSTQ9BQB4 213 aa9.35□□□□□ -0.91
HMGB3-204ENST00000448905 SLC25A39Q9BZJ4 359 aaPredicted RBP9.35□□□□□ -0.91
HMGB3-204ENST00000448905 TRAV12-2A0A075B6T6 113 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 CDK2AP2O75956 126 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 SFT2D2O95562 160 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 PRM2P04554 102 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 HOXB5P09067 269 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 AZU1P20160 251 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 HIST1H1AQ02539 215 aaPredicted RBP9.34□□□□□ -0.91
HMGB3-204ENST00000448905 TNP2Q05952 138 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 PSG3Q16557 428 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 CCDC28AQ8IWP9 274 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 OR8A1Q8NGG7 326 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 OR10J6PQ8NGY7 276 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 MCFD2Q8NI22 146 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 C16orf74Q96GX8 76 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 SHANK2-AS3Q9BTD1 123 aa9.34□□□□□ -0.91
HMGB3-204ENST00000448905 TRAV8-2A0A0B4J237 113 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 PRSS46E5RG02 174 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 FCN2Q15485 313 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 TMEM182Q6ZP80 229 aaPredicted RBP9.33□□□□□ -0.92
HMGB3-204ENST00000448905 BAP18Q8IXM2 172 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 C17orf77Q96MU5 243 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 NPVFQ9HCQ7 196 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 PSENENQ9NZ42 101 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 DNAH11Q96DT5 4516 aa9.33□□□□□ -0.92
HMGB3-204ENST00000448905 H3BP45 60 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 H3BRN7 92 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 CXCL3P19876 107 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 CDKN1BP46527 198 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 PLP1P60201 277 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 ID3Q02535 119 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 OR5I1Q13606 314 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 PXDC1Q5TGL8 231 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 ACOT7LQ6ZUV0 252 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 SSX7Q7RTT5 188 aa9.32□□□□□ -0.92
HMGB3-204ENST00000448905 SLIRPQ9GZT3 109 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms