RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 S100A7P31151 101 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 CNN1P51911 297 aaKnown RBP10.3□□□□□ -0.76
SDC1-204ENST00000429035 SOHLH1Q5JUK2 328 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 BAP18Q8IXM2 172 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 RNF182Q8N6D2 247 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 IGF2BP2-AS1Q96M15 143 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 STRAPQ9Y3F4 350 aaKnown RBP10.3□□□□□ -0.76
SDC1-204ENST00000429035 TMED3Q9Y3Q3 217 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 DNAH17Q9UFH2 4485 aa10.3□□□□□ -0.76
SDC1-204ENST00000429035 CCDC160A6NGH7 325 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 DUSP14O95147 198 aaKnown RBP10.29□□□□□ -0.76
SDC1-204ENST00000429035 PRM2P04554 102 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 MED14OSP0DP75 135 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 PRB4P10163 310 aaPredicted RBP10.29□□□□□ -0.76
SDC1-204ENST00000429035 SLC25A6P12236 298 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 RAP2BP61225 183 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 TMEM182Q6ZP80 229 aaPredicted RBP10.29□□□□□ -0.76
SDC1-204ENST00000429035 LRTM2Q8N967 370 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 OR11H7Q8NGC8 314 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 SOSTQ9BQB4 213 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 ATG101Q9BSB4 218 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 SLC45A2Q9UMX9 530 aa10.29□□□□□ -0.76
SDC1-204ENST00000429035 TRAV12-2A0A075B6T6 113 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 PRSS46E5RG02 174 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 H3BRN7 92 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 IL5P05113 134 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 RHOBP62745 196 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 HIST1H1AQ02539 215 aaPredicted RBP10.28□□□□□ -0.76
SDC1-204ENST00000429035 OXA1LQ15070 435 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 AMTNQ6UX39 209 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 CYP2G1PQ6ZSU1 146 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 GPR82Q96P67 336 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 SLC25A21Q9BQT8 299 aaPredicted RBP10.28□□□□□ -0.76
SDC1-204ENST00000429035 SLC25A39Q9BZJ4 359 aaPredicted RBP10.28□□□□□ -0.76
SDC1-204ENST00000429035 PPP1R14DQ9NXH3 145 aa10.28□□□□□ -0.76
SDC1-204ENST00000429035 SSSCA1O60232 199 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 SCGB1D2O95969 90 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 OR5G3P0C626 314 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 LINC00869P0C866 280 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 DEFB130BP0DP73 79 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 DEFB130AP0DP74 79 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 RRAS2P62070 204 aaPredicted RBP10.27□□□□□ -0.77
SDC1-204ENST00000429035 ZNF575Q86XF7 245 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 C15orf53Q8NAA6 179 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 PSENENQ9NZ42 101 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 HIGD1AQ9Y241 93 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 V9GYH0 126 aa10.27□□□□□ -0.77
SDC1-204ENST00000429035 DYNC1H1Q14204 4646 aaKnown RBP10.27□□□□□ -0.77
SDC1-204ENST00000429035 TRAV8-2A0A0B4J237 113 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 F5H768 121 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 BOLA2-SMG1P6H3BVE0 249 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 ADAP1O75689 374 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 NUDT3O95989 172 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 HTN1P15515 57 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 S100A5P33763 92 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 INPP1P49441 399 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 POLR2GP62487 172 aaKnown RBP eCLIP10.26□□□□□ -0.77
SDC1-204ENST00000429035 RNF212Q495C1 297 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 C1orf134Q5TEV5 83 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 Q6ZR54 194 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 OR4D5Q8NGN0 318 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 LRRC20Q8TCA0 184 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 C17orf77Q96MU5 243 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 UHRF2Q96PU4 802 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 DNAH11Q96DT5 4516 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 PCLOQ9Y6V0 5065 aa10.26□□□□□ -0.77
SDC1-204ENST00000429035 LYRM9A8MSI8 78 aa10.25□□□□□ -0.77
SDC1-204ENST00000429035 A8MTW9 85 aa10.25□□□□□ -0.77
SDC1-204ENST00000429035 CRXO43186 299 aaPredicted RBP10.25□□□□□ -0.77
SDC1-204ENST00000429035 RPL7P18124 248 aaKnown RBP10.25□□□□□ -0.77
SDC1-204ENST00000429035 TMEM144Q7Z5S9 345 aa10.25□□□□□ -0.77
SDC1-204ENST00000429035 SHANK2-AS3Q9BTD1 123 aa10.25□□□□□ -0.77
SDC1-204ENST00000429035 HYPMO75409 117 aa10.24□□□□□ -0.77
SDC1-204ENST00000429035 CCNKO75909 580 aa10.24□□□□□ -0.77
SDC1-204ENST00000429035 FCN2Q15485 313 aa10.24□□□□□ -0.77
SDC1-204ENST00000429035 LINC01587Q99440 93 aa10.24□□□□□ -0.77
SDC1-204ENST00000429035 LINC00854A0A1B0GVQ3 168 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 C9orf170A2RU37 121 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 METTL15P1P0C7V9 234 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 B2MP61769 119 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 SLC38A11Q08AI6 406 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 TRIQKQ629K1 86 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 OR8A1Q8NGG7 326 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 ARL6Q9H0F7 186 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 MGAT4CQ9UBM8 478 aa10.23□□□□□ -0.77
SDC1-204ENST00000429035 SNRPCP09234 159 aaKnown RBP10.22□□□□□ -0.77
SDC1-204ENST00000429035 ANXA7P20073 488 aaKnown RBP10.22□□□□□ -0.77
SDC1-204ENST00000429035 AZU1P20160 251 aa10.22□□□□□ -0.77
SDC1-204ENST00000429035 FLVCR2Q9UPI3 526 aa10.22□□□□□ -0.77
SDC1-204ENST00000429035 ATP5G1P05496 136 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 CXCL3P19876 107 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 ATP5G3P48201 142 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 UBE2MP61081 183 aaKnown RBP10.21□□□□□ -0.77
SDC1-204ENST00000429035 SELENOTP62341 195 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 DLK1P80370 383 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 CLINT1Q14677 625 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 PSG3Q16557 428 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 C4orf46Q504U0 113 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 SPANXN2Q5MJ10 180 aa10.21□□□□□ -0.77
SDC1-204ENST00000429035 S100A7AQ86SG5 101 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms